RNA id: XM_043248827.1


Basic Information

Item Value
RNA id XM_043248827.1
length 5801
RNA type mRNA
GC content 0.52
exon number 42
gene id LOC122351618
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 12732298 ~ 12803408 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAATGACCATGTGGCAGCGGGACAGAGGAAAACCAGAGCATTTCTAATATGCGGCTGTAAACAAAATATCTGTACGCTATTGTGTGGAAAATCATTCCAAATATCAGAGCAAATATTGGCAATTACAAAGCAGGGAGGACCTCCGAATTATGAAGCAATGCTCCGCCAGaccctctctctcctgctctaGTTACCACAACTCCTGCTGCTCCACCGCAACCAAGAGCGCTTCTGCCGCTGCTAGTGGTTTGGCTGCCTCCTAAAGGGACAAAAAGGAGAGTTTGCAGTCCTCATCAGCTGTTGTCTAGTCACATATGGTGCATCGTTTGCATTCCCGAGTCGACATCCCTACCGCTCAGCTTCTTGCCAGCCTGTGGCACTCATAGTGTTCATCAACACAGGATATTAATAAGCGTGTGCTCTTATTTTGCCTGGATAGCACACGCTAAAGacctatttttttcccttttttcctcTCCACTGCCACACGGGTGGTGGCAGGACATCATAGACCATGGAGCCCAATATGGAGTACTGTCTGACCCAGGTTCTACAGAAGGATGTGGCCCGCAGGTTGCAGATGGGTCCGGAGCTCATCGACTACATCACAGATGCTGACAAGTGTCACGACCTGGAGAGTGACCAGACTGCGCTGGATAAAATGGTGGACGGTATCGCCACCTCTTGGGTTAACTCCAGCAACTTCAAGctgGCTTTGTTAGGAATGGACCTTCTATCTGCCTTAGTGACGAGATTACAGGACCGATTTCGTCATCAAGTTGGTACAGTTTTGCCCAGCTTGATAGATCGCTTAGGCGACGCCAAAGATCAAGTCAGAGACCAAGATCAAATCCTGCTGCTGAAGATCATGGAGCAAGCAGCTACTCCTCAGTACATATGGGACCGAATGTTGGGGGGgttcaaacacaaaaacaaccgGACCAGAGAGggagtgtgtctctgtctcatCTCAACTCTGAACACATACGGTGCCCAAGGCTTAACCCTGAGCAAAATTGTACCACATATATGTAATCTACTCGGAGACCCCACAAGTCAGGTTCGGGATGCGGCCATGAACTGCCTTGTGGAAATATACAGACATGTTGGAGAGAAGGTTAGGATTGACCTTAGCAAAAAAGGACTGCCGCAATCAAGgttgaATGTAATTTTCAGCAGATTTGATGAAGTCCAAAGATCTGGGAACATGATCCTCTCCTCAGGTTCAGATAAGAACTTTGATGACGAGGACTCTGTGGATGGGGGCaggtcctcctcctcttcctcttctaaGGGCTTCTCCAACAGCAGGAGAGGGGGCAGCATGGGCTCAATGAGACGACCCAGTTCTGCCTCTGGATCCAGGGCTCCAGGGAAGGATGGTGTCAGTGCAGGAGCTGTGGATGAAGAGGATTTTATCAAGGCTTTTGAAGATGTACCTGCAGTTCAGatataTTCAAGTAAGGAGTTGGAGGACTCTTTGAATAAGATCCGTGAAGTTCTGTCAGATGACAAGCAAGACTGGGAACACCGTGTCACTGCTCTGAAGAAAGTGCGGTCCCTGCTTCTGGCTGGAGCAACCGAACACGAGGGTTTCCTTCAACACCTACGGCTTTTAGAAGGTGCCTTCAAGCTGTCAGCTAAAGATCTTCGGTCTCAAGTGGTTCGAGAGGCCTGTATCACATTAGGGCATCTGTCTTCATTGCTGGGGAATAAATTTGATCATGGGGCTGAAAGCATCATGCCTACGCTGCTCAACTTGGTGCCCAACAGCGCCAAAGTTATGGCCACGTCTGGAGTGGCGGCCATCCGCCTCATCTTGCGACATACACACTTCCCACGCCTTATCCCGATCATCACCAGCAACTGCACTTCTAAATCTGTGGCTGTTCGAAGACGGTGTTATGAGTTTTTAGACCTGTTATTGCAAGAATGGCAGACACACACTCTAGAGAGGCATGTGGCGGTTCTCACTGAGACCATCAAGAAGGGGATCCATGACGCTGACTCAGAGGCCAGATCTGTGGCCAGAAaatgctaCTGGGGTTTCCACGGCCATTACAGTCGAGAGGCAGAACACCTGTTTCAGGCATTGGAATCGACCTATCAGAAGGCCTTGCAGTCTCACCTGAAGAGTTCTGACAGTATAGTGTCTCTACCGCAGTCTGACCGCTCCTCCTCAAGCTCGCAGGAGAGCCTCAATCGTCCTCTGTCAGTGAAGAGTGTCGTAGGAGGACCTGTTACAAGAAGTAAAGTGATCGGCTCTAGGGTGTCCTCCACCCCTGGTGCCCTCCAGCGCTCCCGCAGTGACATAGACGTGAACGCCGCCTCCAGTGCCAAATCTCGCATGTCCACCACAACTTCCCCATCTCCCTTCAGCTCCGCTGCAGCTCTGCCTCCAGGCTCCTACGCCTCCCTGGACGGTGCGCCTGGTAAAATAGATGGTCGTGTGCGGACGAGAAGGCAGAGCTCAGGGAGTGCGGTCAGCGCAAACAGCACTGTTACAGACAGTCGTGGTCGAAGCAGAGCTAAAGTGGTCTCTCAGTCCCAGCCCGGCAGTCGATCCAGTTCTCCAGGGAAGCTCTTGGGACATGCATATGGCAGAATTCCAAGAGCCACTGCCCCAACAACTCCCTCAGACAAGTACTCGAGGATCCCAAGAAGCCAGGGATGCAGCCGTGAGACAAGCCCCAGCAGACTGGGCATAGCCAGGCTGTGTGGTAAAGCTCTTCTTCCTGCCACTTCTTCCTATCGCACGCTAGCCCGGAGCAGTCGCATCCCCCGCCCCAGCATGAGTCAGGGGTGCAGCCGTGACACCAGTCGCGAGAGCAGCCGCGACACAAGCCCTGCTCGGGGCTTCACTCCTCTTGCCTCCCGACGTCACTCTCGCTCCACCAGCGCGCTGTCCACGGCCGAACCCGTGGGCCAGTCAGATCGTTTTGGCTTGATCCATCAGGCTCGCATTTCTGCATCTGTCAATGCTATGAGAGTGCTGAACACTGGCACAGAAGTGGAAGCTGCTGTGGCTGATGCTTTGCTGTTAGGAGACTCCAGGAATAAGCGCAAGCCTTTGAGAAGGAGGTACGAGTCTGATGATGATGCAAACAGCGACGCATCCAGTGCCTGCTCAGAGCGTTCATATAGTTCCCGTAACGGAGGCATTCCTCACTACCTGCGTCAGACAGAGGACGTCGCTGAAGTGCTAAACCACTGCGCCAGTTCCAACTGGTCAGAGAGGAAGGAGGGCCTGCTGGGTCTGCAGAACCTGCTGAAGAGCCAGCGCATTCTCAGCCGTGTGGAGCTCAAGAGGCTATGTGAGATCTTCACCAGGATGTTTGCAGATCCTCACAGCAAGAGAGTGTTTAGCATGTTCTTAGAGACTCTAGTAGATTTCATCACCGTGCACAGAGAGGACCTCCAGGACTGGCTTTTTGTACTACTTACTCAGCTGCTGAAGAAAATGGGAGCTGACCTCTTGGGCTCAGTCCAAGCTAAGGTCCAAAAGGCTCTGGATGTCACAAGGGAGTCTTTCCCCTTTGACCAGCAGTTTAACATTCTAATGAGATTCATTGTTGATCAGACTCAAACCCCCAATCTGAAGGTTAAGGTGGCTATCTTGAAATACATTGAGTCCCTGGCACGGCAGATGGACCCTGCAGATTTTGTGAACTCAAGTGAGACCAGATTAGCCGTGTCTCGCATTATCACCTGGACCACAGAACCCAAGAGCTCTGATGTTAGAAAAACTCTTCATAACTGGGCATGTGAGGAGTTGTCAGGCAGGCCCAGCACTACAGCTCTGCTTCCTGGAGAGGGTCACCTGGAAGAGAGGTGCAAGCAGGCCGCCCAGGTGGTGCTGATCTCACTCTTTGAGCTGAACACCCCCGAGTTCACCATGCTGCTGGGCGCTCTGCCTAAAACATTCCAGGATGGAGCCACCAAGCTTCTGCATAACCATCTGAAGAACTCAAGCAACACCAGCAGTGTGAGTTCACCAAGCAATACAATGGGCCGCACGCCACCCCGGCACCCCACCAGCAGGACTAGTCCTCTCACCTCGCCCACAAATTGTTCCCACGGGGGTCTGTCACCCAGTCGGTTATGGGGTTGGAGTGTCGATGGGCTCTTAAAGCACCCTtctccctctcctcctcctcctactCCTCCGTCTCACTCCTCTATTCCTGCCGGCCCCTCCCTCAGGGCCTTCCGCTGCGCGCTCTCACCAAGTATGCTGGAGTATGACACAGAAAACATGAATTCTGATGAGATCTTTAGCTCGCTGCGTGGTGTCACTGAAGCCATCCAGAGCTTCAGTTACCGCAGCCAAGAGGACCTGAATGAGCCAATCAGACGCGATGGGAAGAAGGATGATGCTGTGAGTTCTTCAGAAACAAGATGgggaaaatgtattattaccccaGGTGGTGATCAGCCCACAGACTCTGGTCGGACGGTGCTGGATAACAAGACCTCTCTGCTAAATACTATGCCACTCCTCTCCTCGAGTCCCCGCCCAACAAGGGAATACCAGCCTGTCAGCTACTCGGACTCTTCTTTCACCTCCTCCCCTTTCAATAAAAGCCTGAAAGATGCAGACCAAGATGCAGAGTCCCTCACTGATGGTAAAGCACTTCCATAGCTATTTGTAGCTGCTTTGTGAAGTGCGCACATGTGTGGGTCTGACTTCCTTTCTGCTGTTGGTGTTACAGACAGCGGCGTGGACCAGTCTGAGGTGGTTGCTGAACTCCTGAAAGAGCTGTCGAATCACAGCGAGCGGGTAGAAGAGAGGAAAGCCGCTCTGTGTGAGCTAATGCGGCTGATCAGAGAAACGCAACTGCATGTTTGGGACGAGCACTTCAAAACCATCCTCCTGCTGCTCCTAGAAACACTCGGGGATGGAGAGCATGTCATTCGGGCATTAGCGCTGCGGGTGCTGAAGGAGATCTTAAACCGGCAGCCGTGGCGCTTTAAAAACTATGCGGAGCTCACCATTATGAAGACCCTAGAAGCACATAAAGACCCGCACAAAGAGGTGGTACGGGCTGCAGAAGAAGCAGCGGCTATGTTGGCGACCTCAATAAGTCCCGATCAGTGTATTAAGGTGTTGTGCCCCATCATCCAGTCGGCtgattaccccatcaacctagCTGCCATCAAAATGCTCACCAAAGTCATTGACCGGCTGCCCAAAGAGGGTCTCCACGGCCCCTGCTTGATGATCTTTTGCTCTTCCTTGCAGGGTTATGATAACTCTGAGAGCAGTGTACGAAAGGCGTGCGTATTTTGCCTTGTGGCCATCTATGCTGTCATCGGAGAGGATTTGAAACCTCACCTCAGCCAGCTGTCTGGCAGCAAGCTGAAACTGTTGAATTTGTACATAAAGCGAGCTCAGAGCGGCTCCAGCGGAAGCGACCAGTCTTCAGATGTGGGAGGGCAGGGCCTGTAGCTGTGCCGCCACCATTCAGAACTACAGCACTCTCTTAGTGCAGGGGGACCCTAGCTGGCTTTTTAACTcacatgcatacacaaacaaacaaacaaacacctaCACACGCTTGCCTACAGATACACAAAGCCGCATACACCTACACCGCTGGACACCCTCCTCCGGCCCCACAAAACCTTCCAGTGGGATGTGCGTCGAGGAACGGCGTCGGACTGAAACTCTTCCTCCAAACTAGGATCACCGTCACTCCGTGTGCATGTCCGAGAAACCGCTATCTGTGGCACAGATGGTGGATTGCTGATGTAGTTTTGTTGCCTTGTCAATGAGAAGATgtgtacgagtgtgtgtgtgt

Function

GO: NA

KEGG:

id description
K16578 CLASP1_2; CLIP-associating protein 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103092 lncRNA upstream 7458 12665012 ~ 12724840 (+) True G69706
TU103009 lncRNA upstream 205425 12518289 ~ 12526873 (+) False G69659
TU103010 lncRNA upstream 205425 12518289 ~ 12526873 (+) True G69659
TU103011 lncRNA upstream 208606 12518289 ~ 12523692 (+) False G69659
TU102968 lncRNA upstream 274800 12457264 ~ 12457498 (+) True G69625
TU103136 lncRNA downstream 63045 12837719 ~ 12840151 (+) True G69723
TU103208 lncRNA downstream 331606 13106280 ~ 13106757 (+) True G69783
TU103215 lncRNA downstream 332921 13107595 ~ 13107832 (+) True G69789
TU103228 lncRNA downstream 355424 13130098 ~ 13133839 (+) True G69796
TU103514 lncRNA downstream 741015 13515689 ~ 13518237 (+) True G69985
XM_043248928.1 mRNA upstream 112876 12562459 ~ 12619422 (+) True dnah7
XM_043249283.1 mRNA upstream 171904 12554613 ~ 12560394 (+) True rubcnl
XM_043249284.1 mRNA upstream 171904 12554613 ~ 12560394 (+) False rubcnl
XM_043249285.1 mRNA upstream 214229 12514296 ~ 12518069 (+) False esd
XM_043249201.1 mRNA downstream 2896 12777570 ~ 12787437 (+) True LOC122351844
XM_043249203.1 mRNA downstream 4239 12778913 ~ 12787437 (+) False LOC122351844
XM_043249202.1 mRNA downstream 5760 12780434 ~ 12787437 (+) False LOC122351844
XM_043249204.1 mRNA downstream 14616 12789290 ~ 12811475 (+) True LOC122351846
XM_043249689.1 mRNA downstream 261219 13035893 ~ 13090342 (+) True tmeff2a
XR_006251865.1 other upstream 1336 12730836 ~ 12730962 (+) True LOC122352187
TU103038 other upstream 102763 12627535 ~ 12629535 (+) True G69670
TU102836 other upstream 576494 12046499 ~ 12155804 (+) True G69527
TU102754 other upstream 1242302 11483437 ~ 11489996 (+) False LOC122352020
XR_006251850.1 other upstream 2337068 10328731 ~ 10395230 (+) False il1rapl1a
TU103176 other downstream 210194 12984868 ~ 12985978 (+) True G69755
TU103175 other downstream 210497 12985171 ~ 12985978 (+) False G69755
unassigned_transcript_1466 other downstream 333741 13108415 ~ 13108496 (+) True trnas-cga_5
TU103281 other downstream 515019 13289693 ~ 13304591 (+) True G69834
unassigned_transcript_1467 other downstream 649040 13423714 ~ 13423826 (+) True trnal-caa

Expression Profile