RNA id: XM_043248079.1


Basic Information

Item Value
RNA id XM_043248079.1
length 2994
RNA type mRNA
GC content 0.49
exon number 13
gene id LOC122351186
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 12707976 ~ 12720690 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaaaaaaaattagaaatcaCCAGCTAACTTCAAAGTTGTCTTAAACGCGCAAGTGACTTTAATATAGGCTGTGTTCTTCAAAGTCATAACGTCCCTGCTGCTTTAGTGTTTGGGATCATATTCATGACTGACAAgtttaatatctatttttatgcaatttgcGAATAATTAAAATCTGTCATCAAGTTCCAGTTTCCGTGTCtcttgcacaaaaacaaaacacgaaCGTCTTTTATCACACGTTTTTGGCGTTgtaatttgataaataataacagcagtTATGTATCGTTCGACGCAAACAGCTGTTAAGCAGCTGTTGCTATGGTTTCCTCCTCAAGCGAAGGAAATTTGTGCTCGCGAGTGGAAGCTGTACGTTTAGCGCACTCTGACGAACTTGCGCCGCTACCGAAACGTTGTTTGCAAAAacgtatatatgtttgtgtaaaaacaaaacgaacTCGCAAGAGCTCCGACTTTTTCCCTTTTGAGTTAACCGCGTGGTCAAACCCCCATAATTCGCACCCTGAAGTAATTTATTGAATGTAGCAATCGAGATCATGTCCAGATCTAACAGCGTGAGCCCACCCGGCGCTGGCGCTCCTGGACTGAGGGGAGGGACGGAGCACAGATCCGCTTGGGGCGAGTCTGAGTCCGTGGCGAACGGATGTCCATACTCGGCCAGATCCTCCTGCAAAAAGCTCATACGGTCCAACAGTCGGTGGAGAGAGGACGATGACTTCGAGCGACAACCGGGCCGAGCCACGACCACCGTCAGCCGGGTTAGTTTCAGATCCAAGTCCGCCTGGCAAGAACACGGGGAGGAGAGCCGCAACAATAACAGATCTTCCCCGAGGTACCGAGATGGAGAAGTGAGACCCAAGTCCGTGGAGCTGGGTTTGGAGGACAGGAGAACCAAGTCCAAACCAGAGGAGGAGCTCATGCCTGAAGTGAACTTTTCCCTGAGCGCGTGCTGCAACGGCGTGATGCAGATTTTCAAATCCAAGAAGTTCCAGTCGGAGAAGTTGGAGAGACTTTACCAGCGCTACTTCTTCCGACTCAACCAGAGCAGCCTGACGATGCTCATGGCCGTCTTGGTGCTGGTGTGCGCGGTGATGCTGGGGTTCCACTGCGCCGGGGCGGTGTGTCAGGTCGCTTACGCGGTGGTTTTCTCCACGGCGATCTTGCTCATCCTCACGCTGATGGTCGTGTGCAACAGGAACGGCTTCCATCAGGATCACATGTGGATAGTTTGCTATGTGCTCATTTTGGTGGTGCTGACCGTACAGGTGACCGGCGTGCTGTTCGTGGAGCCGCGCAGCGCGTCTGAAGGCATCTGGTGGACCGTGTTTTTCATCCATGTCATTTACACGCTTCTGCCGGTGAGGATGAGAGCAGCGGTCATCACTGGAATTATACTCTCTGCCATACACGTGCTGGTCTCATGGAAGTTAAACGAAATGGACatctttttgtggaaacagCTTGTGTCCAATGTCCTGATCTTCTCGTGCACTAATATAGTTGGCGTGTGCACACACTATCCAGCAGAAGGCTCACAGAGACAAGCCTTCCAGGAGACAAGAGAATGTATTCAAGCCCGCCTGCACTCTCAGAGAGAAAACCAGCAACAGGAGCGCCTGCTGCTCTCTGTGTTGCCAAGGCACGTTGCCATGGAGATGAAGGCAGACATCAACGCCAAGAAAGAGGATATGATGTTCCACAAGATCTACATCCAGAAGCACGACAACGTCAGTATCCTGTTTGCGGACATCGAGGGCTTCACCAGTTTGGCATCTCAGTGCACGGCTCAGGAGCTTGTGATGACCCTTAATGAGCTTTTTGCTCGCTTTGATAAATTGGCTTGGGAAAACCACTGTCTGCGGATCAAGATCCTGGGGGACTGTTATTACTGTGTGTCTGGACTTCCGGAGGCAAGGGCAGATCATGCGCACTGCTGCGTGGAGATGGGAGTAGACATGATTGAGGCCATCTCATTGGTGCGAGAGGTCACGGGAGTGAATGTGAACATGCGCGTGGGAATACATAGCGGCCGTGTGCACTGCGGGGTGCTCGGCCTACGCAAATGGCAGTTTGACGTGTGGTCCAACGATGTCACACTGGCCAACCAGATGGAGGCGGGAGGTCAAGCAGGGCGGATCCACATCACCAAAGCCACACTGCAGTATTTAAATGGTGACTATGAAGTGGAACCAGGTTTTGGAGGGGAGAGAAACGCATACTTGAAGGACAACAACATCGAGACGTTTTTTGTCCTGGGCTGCAGTCAGAAAAGGaaagaggaaaaagcAATGATGGCTAAGATGCAGCGTGCTAGAGCCAACTCTTCAGACGGTCTGATGTCGCGGTGGGTTCCTGACAGATCTTTCTCCAGGACTAAAGATTCCAAAGTCTTCAGACAGATGGGCATAGATGAAGCCTCCAGCAAAGATAACCGCTGCGCCCAGGAGGCCCTGAACCCGGAGGACGAGGTCGATGAGTTTTTAGGACGTGCCATCGATGCTCGAAGCATTGACCAGCTGCGGAAAGACCACGTCAAGAAGTTCCTGCTCACATTCCAAACAccttttctggaaaaaaagtATTCAAAAAAGGTGGATGATCGTTTTGGTGGTTATGTGGCCTGTACACTAGTCGTCTtctgctttattgtttttatacaagTCANGAGTTGGTGTTGTATTTTGTCTTGCAGTACACCATTAATGCTGGGCATGTTCATCAGCATCTTTATTATTCTCGCCCATGTCCTCTTTATATGTGCCATTTACTCCTGTGTTAAGCTTTTCCCCGTTACCTTGCAGACAGTGTCAAAGAGGATTGTTCAGTCCCGTGTCAATAGCACACTCGTCGGAGCCTTTACAATTCTGCTTCTTTTCATCTCTGCCTTTGTTAATATGGTAGGAATTTGATCTGAGTCTGATGCTTGGTGGGAAAGGAAATCCTTtgtcagttatttatttatttctttattta

Function

GO:

id name namespace
GO:0045471 response to ethanol biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0009190 cyclic nucleotide biosynthetic process biological_process
GO:0001932 regulation of protein phosphorylation biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004016 adenylate cyclase activity molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103090 lncRNA downstream 60974 12645836 ~ 12647002 (-) True G69704
TU103059 lncRNA downstream 125551 12518286 ~ 12582425 (-) False lrch1
TU102976 lncRNA downstream 278629 12425515 ~ 12429347 (-) True G69631
TU102990 lncRNA downstream 296141 12411507 ~ 12411835 (-) True G69645
TU102989 lncRNA downstream 301214 12406167 ~ 12406762 (-) True G69644
TU103148 lncRNA upstream 10351 12731041 ~ 12731743 (-) True G69733
TU103153 lncRNA upstream 52751 12773441 ~ 12773852 (-) True G69738
XR_006251806.1 lncRNA upstream 66425 12787115 ~ 12789134 (-) True LOC122351847
TU103184 lncRNA upstream 315266 13035956 ~ 13037453 (-) True G69762
XR_006251825.1 lncRNA upstream 507464 13228154 ~ 13232210 (-) True LOC122351987
XM_043248929.1 mRNA downstream 67108 12619276 ~ 12640868 (-) False slc39a10
XM_043248931.1 mRNA downstream 67118 12619276 ~ 12640858 (-) False slc39a10
XM_043248932.1 mRNA downstream 72917 12619276 ~ 12635059 (-) False slc39a10
XM_043248930.1 mRNA downstream 76855 12619276 ~ 12631121 (-) True slc39a10
XM_043249278.1 mRNA downstream 153926 12518284 ~ 12554050 (-) True lrch1
XM_043249565.1 mRNA upstream 2711 12723401 ~ 12729104 (-) True LOC122352069
XM_043248565.1 mRNA upstream 93463 12814153 ~ 12815138 (-) True LOC122351488
XM_043248427.1 mRNA upstream 393813 13114503 ~ 13118222 (-) False ftcdnl1
XM_043248426.1 mRNA upstream 393813 13114503 ~ 13118201 (-) False ftcdnl1
XM_043248425.1 mRNA upstream 393813 13114503 ~ 13117732 (-) True ftcdnl1
TU102995 other downstream 284530 12422429 ~ 12423446 (-) True G69650
XR_006251743.1 other downstream 518320 12166991 ~ 12189656 (-) True gtdc1
TU102802 other downstream 1208604 11497010 ~ 11499372 (-) False LOC122351308
XR_006251823.1 other downstream 2021349 10680158 ~ 10686627 (-) False mrasa
XR_006251803.1 other downstream 2188519 10515272 ~ 10519457 (-) False fdx1
XR_006251867.1 other upstream 17354 12738044 ~ 12738171 (-) True LOC122352189
TU103179 other upstream 264434 12985124 ~ 12985978 (-) True G69757
TU103524 other upstream 752450 13473140 ~ 13495645 (-) False gypc
TU103526 other upstream 752450 13473140 ~ 13495645 (-) False gypc
TU103924 other upstream 1087132 13807822 ~ 13813327 (-) True G70261

Expression Profile