RNA id: TU103208


Basic Information

Item Value
RNA id TU103208
length 478
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G69783
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 13106280 ~ 13106757 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAAGCGTGTTTACAAAATTTCTGGGGGAAAGCCAGCACAATTGACTGCCATCTCCATGGCAACCTTACCCTCTGCCAACAACTCTCCAATTACTGCTAGTGCACGGCAAGGGCACACATACACAGCCTGATAAATAGAAGAGTACAGTGAAGCAGAAGTATAGTCAAACATTCCATACTGCCAATGTAATAACTTCATATTCCTCTAAGCACTAACAATATTTAGATGATTCAGTGGTAAAACACTCTGCACACAGACCTGTAAGCGCTGGTGCTGCTTGTGCCCATGGGCCCTGTTTGAAATTGTGTAAATagcacaaatatttaaacaatgtttaagGTTTTTCAAGTTTATAGGTGTCCAGGTACAGGAACtgaataatcaaatataaaatttcattGCCTAGTATTcactataaattaaatattaattcttGTTAAAACTACAAAGCAGTTCAGTAAAGAGCTGTGAGTGACGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103136 lncRNA upstream 266129 12837719 ~ 12840151 (+) True G69723
TU103127 lncRNA upstream 302872 12773958 ~ 12803408 (+) False LOC122351618
TU103126 lncRNA upstream 331595 12773996 ~ 12774685 (+) False LOC122351618
TU103125 lncRNA upstream 332430 12773334 ~ 12773850 (+) True G69718
TU103092 lncRNA upstream 381440 12665012 ~ 12724840 (+) True G69706
TU103215 lncRNA downstream 838 13107595 ~ 13107832 (+) True G69789
TU103228 lncRNA downstream 23341 13130098 ~ 13133839 (+) True G69796
TU103514 lncRNA downstream 408932 13515689 ~ 13518237 (+) True G69985
TU103566 lncRNA downstream 562349 13669106 ~ 13669444 (+) True G70021
TU103585 lncRNA downstream 579039 13685796 ~ 13686466 (+) True G70029
XM_043249598.1 mRNA upstream 69 13094152 ~ 13106211 (+) True cavin2a
XM_043249689.1 mRNA upstream 15938 13035893 ~ 13090342 (+) True tmeff2a
XM_043249688.1 mRNA upstream 15938 13035904 ~ 13090342 (+) False tmeff2a
XM_043249204.1 mRNA upstream 294805 12789290 ~ 12811475 (+) True LOC122351846
XM_043249201.1 mRNA upstream 318843 12777570 ~ 12787437 (+) True LOC122351844
XM_043248432.1 mRNA downstream 2460 13109217 ~ 13112949 (+) False nabp1a
XM_043248430.1 mRNA downstream 2461 13109218 ~ 13112949 (+) True nabp1a
XM_043248429.1 mRNA downstream 11522 13118279 ~ 13121043 (+) True c9h2orf69
XM_043249138.1 mRNA downstream 69856 13176613 ~ 13179387 (+) True tyw5
XM_043248268.1 mRNA downstream 104988 13211745 ~ 13213541 (+) True LOC122351306
TU103176 other upstream 120302 12984868 ~ 12985978 (+) True G69755
TU103175 other upstream 120302 12985171 ~ 12985978 (+) False G69755
TU103123 other upstream 333171 12772088 ~ 12773109 (+) False LOC122351618
TU103124 other upstream 333171 12772424 ~ 12773109 (+) False LOC122351618
TU103102 other upstream 365220 12732633 ~ 12741060 (+) False LOC122351618
unassigned_transcript_1466 other downstream 1658 13108415 ~ 13108496 (+) True trnas-cga_5
TU103281 other downstream 182936 13289693 ~ 13304591 (+) True G69834
unassigned_transcript_1467 other downstream 316957 13423714 ~ 13423826 (+) True trnal-caa
XR_006251758.1 other downstream 569406 13676163 ~ 13681991 (+) False ccnt2a
XR_006251807.1 other downstream 2294371 15401128 ~ 15425039 (+) False si:ch211-168k14.2

Expression Profile