RNA id: XR_006251825.1


Basic Information

Item Value
RNA id XR_006251825.1
length 3280
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id LOC122351987
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 13228154 ~ 13232210 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTAACCTAAAAACTCCAAAACAACGCAGTACACACCGTTTTCCTCTCAAAGACAGGCAAAGACGGGTTTCTAATTCACCAGCTTTCACCTATGTACAGTGGCTCTGATGAGCTTGACTGTTTACAAAAGGACGTCCTAAAGGCCTCTCCTTTCCGATCCTTTGAGTCTAGCTGACAACTCGGCCTGCGGCGGATATGTCCTTTTCCCATCTTCACAGAGGCTCTGACGTGAGAAACACTGTCTCAGCTGCGTTCCTCTGATTTCTCATATTAGAGGACAGCACTAGTTCTGCAGGGGTCCGATCTCTGAGCCAACAGAAGAAACAGATGGTAAAAAATGAGATTGGAGGATGGGTTTACAAAGTTATATTATTCAcagtttttgatcaaaaatataattgtaacaAAAGGAATAGAAATCCTATTTTTCATATATCTGCTGCTGAAGAATTCAGTTTTGTTCAGTCTCTgttaacaaaacacaacaaactttTATTAGATGAGACAGGGGTCAATACGTACATTTCTGCAATTTGGCAGATACGATGTAACATAACTTTAGCCTATacttgtgtgttataaatacttttatactaataaaatgtattatatgcttaatattaaatgtatgtgctgctattaaacactttatttaacagatgattgtgatataataataataataagtaatacttttaaaataccaGCTGATAAAGCTTCTAGAGATTTAATGAACAGTGATCTCTTGCCGTCAAATCTGCAGACAAATGCTTGTAGCTGTAGGCAGACTTTCTGTTTGGTTAGTATTGCGGTGCTATGGTTTGGATCATGTTCCTCCTGGTGAGTTTACCTGTCATGCTATGCCTCTGTGATGAATGATGCCTCCAGGGAGTCTGCAGTCACCTGTTTGTTTATTGATGTAAATGGAGCTGGGTACTAAACAGGCCAACTGAAACAGTCAGAAAAGGGCCTACTAAACTGAATAGGCCATTAAGGTTGACAAATGTGttggcaaaaaacaaacaaacaatctgTCCTAATGTATAAGCCCGATATGTAAATTAATTGTGTGGGTTTAGATTAATgtgataataaaacaaacaaatagttcctattaacactttttaatcaattttcaCTACTtgttattagcatgcataatactattgtgtatatatataatatatatataaaatatgcctGTGCGTTTATAAAACAATACTTTGGTTTCTTGTAAAGTTGACATTATTTGCAAttcaagtttgtttgttttttaatatactggTTTGCAGTGTTTGTATGAGAGTTTGCAGGGTCACAGTCTTAATGGCATTGCTAGAGAATTAAAAAGTGTCTACTGGAGGAAATCAAATGTCAATgtgacataaaatatgtaaaaagatGATTCTTTAATGCTGAAGTTCCAATTGTGGAACAGTCTTTACTTTTGTTGAATCACAGAGATGTCATTGGGGTCTTTGTCAGATTGAGGGATACGCTTTGGGACACATGGACATGTGGATGAATGGAAAGAATAGTGGGTGGGAAAAACCTGCTTCCCTGGTTTACAAATCAAGCTACAGTTTCCATGTGAAACACAATCTATACATATTTGATTCAGCATATTGTATGAGCTGATGTTTGTGGTGAATGTGAAAAAGGATAGAGGattgttctgttctttttacCGAAGCAGACCAGAGGTTCCCATGGGAATTTATTCCATAGGAGAAAATCTGAACTTTCAGGGATGTGAAAACAACACTCTCTGCccatcatcacacacactcatctagAGAGAAACTTGACTCTCACTGATTTCTCCTTGACTGTGGATTCAGTTATTCATCACTTAATGGATGCTTTTTGTCCAAAAAAGTGTCTTGCTCGAGGTCTCGAGGAGAAATTCTCCATTTCACCGCTCTCACTTTCCATGGTTTAAAATAAGAACCCACCCAAATTTAACTGTGCCACCATTCAGTTAAGAAGTAGAAGTTCATCATTCTGCAGAGAGAACAGACAGGATGTATTATtcataacataataatatatatttttcataggCCTAATGACAGTTTGAATTACCCTATTGAATTTACAGTCTACTTTAGAACTGTAGGCACATATTGTCTTTAGAATCCTTATAGGGGTTGAATATTTctgcatgaaaaacaaactgGAGTGGGGCGATGACATTAGGCCATTGATACTTTGTGAGTCAAATTAGAGCAAAAGATGATctgttctttaaaaagtaatttccaTTTGGTTTTTACTCTTACATGACCGCATTTTGTGACCTCTCTCCTTCTGACTAGTAATAGTAAATGAAAAGCTcttgaaaatgaatgcactTGCCACCAATGGGTTGAGAAAGCTTTTAGCATAACCACTCTTCAGTAAAACTTCTGTAAAATTCCAGGATGTAGTAGAGATGACAAGTAGAATTTAGTGAAAACTCTTTTCCTTTGAATAATGGTTCAGCTGTAGTTCACTGTCACGTATCCACATCTTATGAATGATGTAACTGTACATGTGTAGACTTGACAATTGATATCTGTATCTGTGAAGGTAATAGAGAGATGGTGGAAAAGAATTCAGCCGTGACAAAAGcatggaataaataaaataagatgtgACCTTTCAGTCATCCTTACCAAACACTGTATCCTTTCAGCTtcctaaaaaacattttgactgaTTAATCTTTTGAAAAGCAGTTGGCTTCTATGTGAGTTTTTAGACAGTACTTTAAATTTAGTCCGttttttattgtcatatttatttttaccttgaCTAAAATGCTATAAACCCTTTCCAAATCACACAACTGATTTGTTTCCTCTGTGATCAACTACATAGATGACATGGCAGTAATGTGAGACAGAAATATATGTAAAGcaaaaaagtgaaaagagaGAACAACACAGTTAGGGTGGAGCGGTTTAGGGTGGAGGCTATAGAGAATTGTCAGAATgtttcactttcaaaaaaacTGCCACAACTGTCACAATTAATAAAGTTCAAGTCTTAATCTCCTTGTGTCAATATCATAACTGAATCTTAAATCTGTAATCATTTGCAAGTGTAATGTTCTGCAGCTTGTTAGATGCATCCTGCAGCTTCTAACAAGCTCTCCCTAAAACCTATAAACCTACTCAAGAGCCCTTTAAACAAGAGACCACCCATCTCTTAAGAGACTATATCTCTCATTCACCTGTACAGAGTTGTTAAGTTTGCACTACAAAAAACCTGGAAGGCTTTTATAAGTCATGGTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103184 lncRNA downstream 190701 13035956 ~ 13037453 (-) True G69762
XR_006251806.1 lncRNA downstream 439020 12787115 ~ 12789134 (-) True LOC122351847
TU103153 lncRNA downstream 454302 12773441 ~ 12773852 (-) True G69738
TU103148 lncRNA downstream 496411 12731041 ~ 12731743 (-) True G69733
TU103090 lncRNA downstream 581152 12645836 ~ 12647002 (-) True G69704
TU103390 lncRNA upstream 70193 13302403 ~ 13327413 (-) True G69888
TU103400 lncRNA upstream 78663 13310873 ~ 13325669 (-) True G69896
TU103479 lncRNA upstream 179602 13411812 ~ 13412439 (-) True G69953
TU103525 lncRNA upstream 240930 13473140 ~ 13495645 (-) False gypc
TU103573 lncRNA upstream 437593 13669803 ~ 13673807 (-) False tmem163a
XM_043249133.1 mRNA downstream 17088 13179504 ~ 13211066 (-) False lrrfip1a
XM_043249134.1 mRNA downstream 17089 13179504 ~ 13211065 (-) False lrrfip1a
XM_043249135.1 mRNA downstream 17090 13179504 ~ 13211064 (-) False lrrfip1a
XM_043249116.1 mRNA downstream 17090 13183155 ~ 13211064 (-) False lrrfip1a
XM_043249114.1 mRNA downstream 17090 13183155 ~ 13211064 (-) True lrrfip1a
XM_043249436.1 mRNA upstream 3197 13235407 ~ 13236184 (-) True prlh
XM_043249431.1 mRNA upstream 4471 13236681 ~ 13251659 (-) True mlphb
XM_043248869.1 mRNA upstream 122541 13354751 ~ 13362915 (-) True cops8
XM_043248870.1 mRNA upstream 126616 13358826 ~ 13362914 (-) False cops8
XM_043249085.1 mRNA upstream 168042 13400252 ~ 13410399 (-) True ints6
TU103179 other downstream 242176 12985124 ~ 12985978 (-) True G69757
XR_006251867.1 other downstream 489983 12738044 ~ 12738171 (-) True LOC122352189
TU103144 other downstream 516330 12708631 ~ 12711824 (-) False LOC122351186
TU102995 other downstream 804708 12422429 ~ 12423446 (-) True G69650
XR_006251743.1 other downstream 1038498 12166991 ~ 12189656 (-) True gtdc1
TU103524 other upstream 240930 13473140 ~ 13495645 (-) False gypc
TU103526 other upstream 240930 13473140 ~ 13495645 (-) False gypc
TU103924 other upstream 575612 13807822 ~ 13813327 (-) True G70261
TU103993 other upstream 706049 13938259 ~ 13939868 (-) True G70294
TU104031 other upstream 964269 14196479 ~ 14253776 (-) True G70317

Expression Profile