RNA id: XM_043248890.1


Basic Information

Item Value
RNA id XM_043248890.1
length 2127
RNA type mRNA
GC content 0.36
exon number 4
gene id gypc
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 13473135 ~ 13495667 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTAAGGGTGGAGTGGGCTGAAAGGGGAAGTTCACGTGCCATACATTTAAACTTAACGGATCTAAAAACAGAACTCTGATATGATTCATGATAATATTTCAACCCTTTTAGAAAGCGAAAGAACAACTGAGCAGAGGAAGTATTTGTGTTCCTAGAAAAAAGGACAGGAGGACAGCTTGCAGGCTGAGGGAGAACTTGTTGCAGAACTGTTCAAGAAAAGTTGACATCTCATCATCCCTGAGAACACTCTCCCACAGCTGTCCCCCTCAATCTCACTGCCAAATATTCCTTCACATGTCTGTAATGGCCAACTCCACAGAACGTAGCGTAACCCCTACTGAAAGCATATCTGACACATCACCCATATCTATTCAGGGACCATACTTTGAAGCCATAGTGGGCGTTGTCATTGCTGTGGTGGTTCTGGCCCTGCTCCTCCTCCTGGCCATCATTCTGCGATACATGTACAAGCACAAGGGCACATATCATACCAATGAGGCCAAGGGCACAGAGTTCGCGGAGACAGCAGACGCTGCTCTGCGTGGAGACCCTGCCCTCCAGGACGCCATGGATGAGAGCAAGAAAGAGTATTTCATATGAGACACAATAGCTGGCCCTTTATACACATCACATAATAAACTCCTACAGGCCCACATGATGCCTCAATCCTGTTTGCTGGAACTGACTGAGCTCCccgcaaacacaaacaaacaccaaGTGTATTGTAAAATTCCTCTATATTTCAATATCTAAGAgcgtttatatttatttgtttcagaaAAAGAGTTAATATTGAGTACAGATGAAAGAATATGCCACACTCCTTGTAAAGCTGAGCGTCTAAAAGAGCATCAGCTCAGGAGAATGAGATCAGATGTGTTCAGATGAAGAGAAGGAAAGTCTTTGATCTCATTAGAAAGAATGTGAACGATTGGCGTAATGTGAAAACATTGAAATCAACACTGTTAAAAGACAAGAATGTGAAATTAATTGGTTTTGTATATGACATATGGGACACCGGACCACAAAATCAATCATAAGGGTCAATTTTGAACTTTGAAACTGAGATTTAgggtttgttaggacaggacaatatttAGCCGAGaaacagctatttgaaaatctggaatctgagggtgcaaaaaaaatcgcCTTCGTAGTTGAAGTCAAATGAAgtcttgatatatttacagggcaaaatgtacaaaatatggAACATTATCTTGATATCTTAATTATTTTTggtattaaagaaaaaacaataatttgttACCAtccaatgtatttttggctattcaGAGATACCCTTgatgactgtttttgtggtccagtaAGAATCAGGTATCAGATTCATGAATATCTCAAGAAAGAAGTTAGTTTTTAAGAAGTTTGTCagtttttaagacatttttaagaagtttaagttttttcttattttttaaaagatgaaaatagCTTTGTTGTTTAATTGTATGGCAGTTCTTGCCAAAGACTATCCGGTCAACTCAATATTAAACACCTCcaaaagcatcttttttttgcagatttatctAATGATCATAATAAACatgcactgttttatttttgactggCTTTACAGGAGTTCAGTCCtcaatgtcacattttaatgctccatgtttttaaaatagttactTTCTAGGAGCCTGTCTCAAGATACATATCAGAAATATATCTTTTCCATATTAATGTGtacatacactttttttaaaaaaaaaaaaaggctaaaaagtCATCACTGGTATggtaactttttaaaacaaaccttGTACCTAAAGGGTGCATACATTTATGCCTTAAAGTTACATATCAGTACCTAAAAGGCTATTATTAGTACCTTTTTGAGGCTTTTGCacattgttctgtttttacTGGGTGATTCTAATtccaactatttttttttgcttgtggggaaataaaagttagtttttttgtaagaaTGTCTGAGATTTAATTAGACAGATCTAATGAAATGTTGCTTTCTAATTAGAAGCAGTATTAGAGTTAGTCAGCGGAGtaagtaaatgagaaaagtatCTTCTTTAGATGCCTTAACTTTTTAATTCAATCTATAGTAATGCTttgacaacaaataaaacaaattatatca

Function

GO:

id name namespace
GO:0019897 extrinsic component of plasma membrane cellular_component
GO:0005515 protein binding molecular_function

KEGG:

id description
K06576 GYPC, CD236; glycophorin C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103479 lncRNA downstream 60696 13411812 ~ 13412439 (-) True G69953
TU103390 lncRNA downstream 145722 13302403 ~ 13327413 (-) True G69888
TU103400 lncRNA downstream 147466 13310873 ~ 13325669 (-) True G69896
XR_006251825.1 lncRNA downstream 240925 13228154 ~ 13232210 (-) True LOC122351987
TU103573 lncRNA upstream 174136 13669803 ~ 13673807 (-) False tmem163a
TU103577 lncRNA upstream 179051 13674718 ~ 13675514 (-) True G70027
TU103589 lncRNA upstream 183713 13679380 ~ 13682139 (-) True G70033
TU103926 lncRNA upstream 320044 13815711 ~ 13816743 (-) True G70263
TU103938 lncRNA upstream 339579 13835246 ~ 13835699 (-) True G70271
XM_043248171.1 mRNA downstream 18285 13449870 ~ 13454850 (-) False faima
XM_043248170.1 mRNA downstream 18437 13449870 ~ 13454698 (-) True faima
XM_043248838.1 mRNA downstream 28963 13433965 ~ 13444172 (-) True parp14rs1
XM_043248842.1 mRNA downstream 48290 13420015 ~ 13424845 (-) True dhrs12
XM_043249085.1 mRNA downstream 62736 13400252 ~ 13410399 (-) True ints6
XM_043248889.1 mRNA upstream 17935 13513602 ~ 13515484 (-) True LOC122351673
XM_043248888.1 mRNA upstream 20021 13515688 ~ 13574954 (-) True cntnap5a
XM_043249058.1 mRNA upstream 146636 13642303 ~ 13671482 (-) True tmem163a
XM_043248515.1 mRNA upstream 189318 13684985 ~ 13694187 (-) True LOC122351432
XM_043249524.1 mRNA upstream 264657 13760324 ~ 13765326 (-) True mmadhcb
TU103179 other downstream 487157 12985124 ~ 12985978 (-) True G69757
XR_006251867.1 other downstream 734964 12738044 ~ 12738171 (-) True LOC122352189
TU103144 other downstream 761311 12708631 ~ 12711824 (-) False LOC122351186
TU102995 other downstream 1049689 12422429 ~ 12423446 (-) True G69650
XR_006251743.1 other downstream 1283479 12166991 ~ 12189656 (-) True gtdc1
TU103924 other upstream 312155 13807822 ~ 13813327 (-) True G70261
TU103993 other upstream 442592 13938259 ~ 13939868 (-) True G70294
TU104031 other upstream 700812 14196479 ~ 14253776 (-) True G70317
TU104362 other upstream 1807436 15303103 ~ 15305975 (-) True G70549
XR_006251733.1 other upstream 1894182 15389849 ~ 15399437 (-) False tmtc4

Expression Profile