RNA id: TU103893


Basic Information

Item Value
RNA id TU103893
length 2041
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id rif1
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 13879570 ~ 13912943 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTAAAATATTTTGGTCAAGGAAATTTTAACATgcagataaatacatttaagtgatttttattgttcaaaAGAAATTCCATGAAGAAATCATGACATGAGACAGATTGACTGCAGAAGCGTGGTGTGCTTTATTAGCTACTGATTCAAGGTATACATCTTCACCTAACCCCACACCTACAgaatcaaagaaacaaaacacacatgcaaatagTGGCCAGCCTTCAGCAAGGGAGGGAGGAGGCTTGTTTTTAACATCAGTACATTTTCACTTTAGAGGAACTGATGTCCTGTCCTCAACATcgagttttttttcattttcgtgTGGCAACGTTAGTGCCTCTGTTCGGCTTTTATAAAACACTCAATttgagatttttcttttttttcccacatatAAAGTGAACCATGAGCCCATCTCTCGTTGTGCAAACGTTTCAGCGTTAAAACTTTCAGGATGGCCTTCTTTGAATGTAGTGTGATtgcaatatacaaaaataatgggCTCCAGTTACTTAACTCTTAGAATAGAACAACAAAGATAAATACAATTGTCTGTGACTTATATAGGTATGTATAGTTTGTCAGTTTCTCATGCCACAACCACAATAGACTTTGTGACATGGGCACAAACGAAATTTCCTAACAGTAATGAGGACAAACAGTAGCGTAACTACTTTGACTAACATTAGTACACATAAAATAGTTTGTTCTGTCTGAGTGGATTTCAAACTCCGTCATGCACAAGGAGCTTGAGAGGGCAGTTGTTGTATTTAGATGGCTTCCACGTAGTTGGCAGGGAGCATACCGGTCTTTCCAGTACGCTGCACAGTGCCATACATCCAACCCTCATCGATAGCTTGCACGTTCACAATGACGTCACCGTCCTTAAAGGACACCTCATCGTTGTCTGCAGCAGCATAGTCATACATGGCACGGACAGTTTTCCAGTGGTTGAGGGATGTGAGGGGACAGAAGAAACAGTGGTCTGTTGTGTTGCCACAGAGGAGGATCTCTGCTGAACCTCAATAGTCTTGGTCTGTGTAACCGTGTAGAGTGGAGACACCAAAGCCATTGCTGTAGAGGGATGCATGATGGTCCACGTTCTCAGACACCTCTGACTTCTCGTCGCCCACACCACTCATTGCGCTGGTGGAGCGGGAGTGCTCCTTACTGCGACGCTGGGCTTGGACTGAACAATGGGACAAAAATGTCAACCTTACCTCTTCTTTGACAGACTGCCAGCCAAGGAAGGTGGCAGATATATACTTAATTCATTTACAGTAAAGGGTCTAAAAGATAATCTACGATCAGCAGGTCATTATACAGTTTGGTGCTCATTAATCAAGTGCAACTGCCCAATCACTAAGAAGCATTCCAGAAAGCTGGTCTAATAAGGCTTAGTGACAACAGAGGAGTGTCCTACCTGACATCATGTGAAGACTTCTGGACTGGATGTTGTCCTCGGCAGGGTCATAGTCAAAGACAGAGCCGGGGTTTGTGCGCCACACACGCAGGTctttgagaaaaagaaaaaacggtTTTAGTGTCTCATTTGGCATGTTTTTTTAGATTCTATTTCTAAACTCAAGTGTGTTTAGTGTGCACAGAACACAGTATGCGTCAGCTGACCAGTGATGGTCTCCTGATCGTGCTCCTCTGCACGTCTCCTCTCCATCTCCACCACGCGCCTCTGGATGCCGCGGTAGCTGATGTCACTGAAGTCCTGGGTGTTCCTCTTCACGCGCTCAGTGACGGGGTCAGAGATGGTGGGGGTGAAGCTGCCCTTACTCTTCTCAAAGTCCTGGTGGTATCTGACCTGAGAAGACCCACGGATAAGCAAAACATGAGCCAGGAGACACAAAGAAACTGTTACTACATACATTGCTTTACAAGTGGACATGAAAGTTAAAGGGATAGACCGCCACAAGAACACATCTTCagaacaaaaattaagatatttttgaagcagtctgagagctctctgaccctccatagacagcaacacaactgaaatgatccaggtccagaaacgtagtctcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104009 lncRNA downstream 12934 13878124 ~ 13878412 (-) True G70306
TU104006 lncRNA downstream 14880 13873518 ~ 13876466 (-) True G70305
TU104007 lncRNA downstream 16738 13873518 ~ 13874608 (-) False G70305
TU104004 lncRNA downstream 18335 13872706 ~ 13873011 (-) True G70303
TU103986 lncRNA downstream 29411 13861522 ~ 13861935 (-) True G70289
TU104011 lncRNA upstream 28289 13923749 ~ 13924104 (-) True G70308
TU104012 lncRNA upstream 29156 13924616 ~ 13924836 (-) True G70309
XR_006251857.1 lncRNA upstream 278357 14173817 ~ 14189001 (-) True LOC122352120
TU104049 lncRNA upstream 348827 14244287 ~ 14247328 (-) True G70332
TU104075 lncRNA upstream 467579 14363039 ~ 14372674 (-) False LOC122351495
XM_043249528.1 mRNA downstream 67561 13821399 ~ 13823785 (-) True tsn
XM_043248470.1 mRNA downstream 104218 13783785 ~ 13787128 (-) True eaf2
XM_043248469.1 mRNA downstream 107894 13777626 ~ 13783452 (-) True si:dkey-91i10.3
XM_043249524.1 mRNA downstream 126020 13760324 ~ 13765326 (-) True mmadhcb
XM_043248515.1 mRNA downstream 197159 13684985 ~ 13694187 (-) True LOC122351432
XM_043248863.1 mRNA upstream 311 13895771 ~ 13912943 (-) False rif1
XM_043248404.1 mRNA upstream 18414 13913874 ~ 13921597 (-) True tnfaip6
XM_043248526.1 mRNA upstream 30453 13925913 ~ 13961097 (-) True itgb5
XM_043248144.1 mRNA upstream 66297 13961757 ~ 13972062 (-) False rbm44
XM_043248143.1 mRNA upstream 66297 13961757 ~ 13972062 (-) True rbm44
TU103924 other downstream 78019 13807822 ~ 13813327 (-) True G70261
TU103524 other downstream 395701 13473140 ~ 13495645 (-) False gypc
TU103526 other downstream 395701 13473140 ~ 13495645 (-) False gypc
TU103179 other downstream 905368 12985124 ~ 12985978 (-) True G69757
XR_006251867.1 other downstream 1153175 12738044 ~ 12738171 (-) True LOC122352189
TU103993 other upstream 42799 13938259 ~ 13939868 (-) True G70294
TU104031 other upstream 301019 14196479 ~ 14253776 (-) True G70317
TU104362 other upstream 1407643 15303103 ~ 15305975 (-) True G70549
XR_006251733.1 other upstream 1494389 15389849 ~ 15399437 (-) False tmtc4
TU104521 other upstream 1875961 15771421 ~ 15771864 (-) True G70663

Expression Profile