RNA id: TU104009


Basic Information

Item Value
RNA id TU104009
length 208
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G70306
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 13878124 ~ 13878412 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCAGACACAAGTTTAGCCACTGATTTAGCATGAAGGATTTGAGGAGTGTCATGGACAGCAATGTACTGGCCTTTGGCCTTCTCATACTTCTCCTTGTATTTCATCACTGACAAGTTCAGAGTTCTGCTTAGCCAGAACGGTGTATTTATCATCAGGAACAGACATTACACAGCCCTTCAACATTTCCTTATCGTACTTGTACTCAAC

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0042692 muscle cell differentiation biological_process
GO:0031497 chromatin assembly biological_process
GO:0048468 cell development biological_process
GO:0006323 DNA packaging biological_process
GO:0006325 chromatin organization biological_process
GO:0022607 cellular component assembly biological_process
GO:0006333 chromatin assembly or disassembly biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0006334 nucleosome assembly biological_process
GO:0071824 protein-DNA complex subunit organization biological_process
GO:0065004 protein-DNA complex assembly biological_process
GO:0034728 nucleosome organization biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0030154 cell differentiation biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0014866 skeletal myofibril assembly biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0071103 DNA conformation change biological_process
GO:0006996 organelle organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0051276 chromosome organization biological_process
GO:0070925 organelle assembly biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0016043 cellular component organization biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104006 lncRNA downstream 1658 13873518 ~ 13876466 (-) True G70305
TU104007 lncRNA downstream 3516 13873518 ~ 13874608 (-) False G70305
TU104004 lncRNA downstream 5113 13872706 ~ 13873011 (-) True G70303
TU103976 lncRNA downstream 11976 13859783 ~ 13866148 (-) True G70288
TU103986 lncRNA downstream 16189 13861522 ~ 13861935 (-) True G70289
TU103895 lncRNA upstream 1158 13879570 ~ 13895460 (-) True rif1
TU103897 lncRNA upstream 3338 13881750 ~ 13911853 (-) False rif1
TU103893 lncRNA upstream 12934 13891346 ~ 13895460 (-) False rif1
TU103898 lncRNA upstream 12934 13891346 ~ 13895460 (-) False rif1
TU104011 lncRNA upstream 45337 13923749 ~ 13924104 (-) True G70308
XM_043249528.1 mRNA downstream 54339 13821399 ~ 13823785 (-) True tsn
XM_043248470.1 mRNA downstream 90996 13783785 ~ 13787128 (-) True eaf2
XM_043248469.1 mRNA downstream 94672 13777626 ~ 13783452 (-) True si:dkey-91i10.3
XM_043249524.1 mRNA downstream 112798 13760324 ~ 13765326 (-) True mmadhcb
XM_043248515.1 mRNA downstream 183937 13684985 ~ 13694187 (-) True LOC122351432
XM_043248863.1 mRNA upstream 17359 13895771 ~ 13912943 (-) False rif1
XM_043248404.1 mRNA upstream 35462 13913874 ~ 13921597 (-) True tnfaip6
XM_043248526.1 mRNA upstream 47501 13925913 ~ 13961097 (-) True itgb5
XM_043248144.1 mRNA upstream 83345 13961757 ~ 13972062 (-) False rbm44
XM_043248143.1 mRNA upstream 83345 13961757 ~ 13972062 (-) True rbm44
TU103924 other downstream 64797 13807822 ~ 13813327 (-) True G70261
TU103524 other downstream 382479 13473140 ~ 13495645 (-) False gypc
TU103526 other downstream 382479 13473140 ~ 13495645 (-) False gypc
TU103179 other downstream 892146 12985124 ~ 12985978 (-) True G69757
XR_006251867.1 other downstream 1139953 12738044 ~ 12738171 (-) True LOC122352189
TU103993 other upstream 59847 13938259 ~ 13939868 (-) True G70294
TU104031 other upstream 318067 14196479 ~ 14253776 (-) True G70317
TU104362 other upstream 1424691 15303103 ~ 15305975 (-) True G70549
XR_006251733.1 other upstream 1511437 15389849 ~ 15399437 (-) False tmtc4
TU104521 other upstream 1893009 15771421 ~ 15771864 (-) True G70663

Expression Profile