RNA id: TU104117



Basic Information


Item Value
RNA id TU104117
length 442
lncRNA type read_through
GC content 0.49
exon number 2
gene id G70382
representative True

Chromosome Information


Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 14477332 ~ 14562992 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TGAAAGGGGGGGGGGAGGAAGAAGAAAGCAGCATCCTGTAGGTCATGTTTCTGGAGAAAACCTAAACTCCTCAGGGTCTTTGGGAAGACTGATCTGAATCAGCATAATCCCACCAATATTAATATCCATCCCGACATCATCTCTTAGCAGATTGGGATCAGTGTGTTTAAAGGGAGAGTGACAGGGTGTGACATGGAAAGCAGCTCATCGGTGATGCACAGGGTGTCTGGACAGCATAGTAAGAAGTCTTCAGTGCATCTGCATCTAGACGCCCTCCTCTTCGTGCTGGTTGTCTTTATAAATATCTCTGACCAGCAGCACTCGAGTCAGGAGCCTAGCCAAAGCGCTCTTCTCTAGAGGCGTCGAGCTGAACCACAGTGGACTGTCCGAGGAAGCAGAGACCTCTGGCTTCATGTACAAAAAATCTTTCCTCTGTCTCACA

Function


GO: NA

KEGG:

id description
ko00052 Galactose metabolism
ko00500 Starch and sucrose metabolism

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU104075 lncRNA downstream 104658 14363039 ~ 14372674 (-) False LOC122351495
TU104049 lncRNA downstream 230004 14244287 ~ 14247328 (-) True G70332
XR_006251857.1 lncRNA downstream 288331 14173817 ~ 14189001 (-) True LOC122352120
TU104012 lncRNA downstream 552496 13924616 ~ 13924836 (-) True G70309
TU104011 lncRNA downstream 553228 13923749 ~ 13924104 (-) True G70308
TU104132 lncRNA upstream 26866 14589858 ~ 14590275 (-) True G70393
TU104140 lncRNA upstream 31271 14594263 ~ 14595342 (-) True G70396
TU104139 lncRNA upstream 31432 14594424 ~ 14595342 (-) False G70396
TU104213 lncRNA upstream 353808 14916800 ~ 14918840 (-) False G70438
TU104214 lncRNA upstream 353808 14916800 ~ 14918840 (-) True G70438
XM_043249736.1 mRNA downstream 50526 14408577 ~ 14426806 (-) True arhgef7a
XM_043249737.1 mRNA downstream 50527 14408577 ~ 14426805 (-) False arhgef7a
XM_043249732.1 mRNA downstream 50527 14408577 ~ 14426805 (-) False arhgef7a
XM_043249733.1 mRNA downstream 50528 14408577 ~ 14426804 (-) False arhgef7a
XM_043249738.1 mRNA downstream 50528 14408577 ~ 14426804 (-) False arhgef7a
XM_043249440.1 mRNA upstream 6818 14569810 ~ 14573059 (-) False LOC122351989
XM_043249442.1 mRNA upstream 6818 14569810 ~ 14573037 (-) False LOC122351989
XM_043249441.1 mRNA upstream 6818 14569810 ~ 14573037 (-) True LOC122351989
XM_043249443.1 mRNA upstream 11803 14574795 ~ 14578272 (-) True ska3
XM_043249444.1 mRNA upstream 11803 14574795 ~ 14578261 (-) False ska3
TU104031 other downstream 223556 14196479 ~ 14253776 (-) True G70317
TU103993 other downstream 537464 13938259 ~ 13939868 (-) True G70294
TU103924 other downstream 664005 13807822 ~ 13813327 (-) True G70261
TU103524 other downstream 981687 13473140 ~ 13495645 (-) False gypc
TU104362 other upstream 740111 15303103 ~ 15305975 (-) True G70549
XR_006251733.1 other upstream 826857 15389849 ~ 15399437 (-) False tmtc4
TU104521 other upstream 1208429 15771421 ~ 15771864 (-) True G70663
TU104983 other upstream 2254148 16817140 ~ 16823694 (-) False G70986
TU104984 other upstream 2254148 16817140 ~ 16823775 (-) True G70986

Expression Profile