RNA id: TU104307


Basic Information

Item Value
RNA id TU104307
length 2740
lncRNA type read_through
GC content 0.48
exon number 2
gene id G70503
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 15013357 ~ 15275841 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGTGTGCGTTCTCTTGTGAATCTTCAGGTTTTCCGATCTCGCGAAGACTTTGCCACATCCAGGGAACGGGCAGGGGAAAGGCTTTTCACCCGTGTGGACGCGTATGTGATTGACCAGTTTATATTTGGCTTTAAAAGGCTTGCTTTCCCGGGGACACTCTTCCCAAAAGCAAACGTGGTTGCTCTGCTCGGGTCCTCCAACGTGCTCGACCGAGACGTGGGTGACCAGCTCGTGCATGGTGCTGAAAGTTTTATTGCAACTCTTCTTCGGATTGCTGAGCTGCTCCGGATCGATCCACTTACAGATCAGCTCTTGCTTAATACACTGCTGCCTCATGTAGCGAAAGAAGGCACCGGGGTGATGGTGATGCGCTGCCATATTCATCCCCATGTTCATATTCATGGAGCCGTACTGGTTGTGCAGCTGAGCGGCCGAGTAAGGGTCGGTCCTCGGGCTGGAGACCTGGTGGTACTGGTCTGATCGCCCGAAAACCTCGCCCGGTAGTCCGAGTCGCATCTGCCCGTTGAGCACGTTTGGGGAGCCGTGGGATCCATGCTGCTCGTGGATGCTCGGAAACAGAATGTGGCCTTGgctgtctgtgtgagagtgatGGAGCGAGCCGGCGGTGGGGCCGAAGAGCGCGTGCTGGCCTCCCGCCGGTGAAGATTCCCCGAATCCACGGCTGCGAAAGAGAAAGTCCCGCGTGGAGTTAAACGGCGAGCTCGCGTATGAGGTGACATGAGCCGCGTGCGCGCCCAGAGCCGCGGCAGGGTAACCGGGCGCTTGGCTCGTGAACGCAGAACTCTGTCCGGGCGAGAGATCGTGGTTCAGTTTGAAGGCGCCCATGTGCGCCGAGTCGACGAAGCTGTTCTGCGCTAAACTCAAGTCTCTGTCCTGCATCTCACTGGAGGAGTGATGATGCCTGGCAAAGGTGCCCACTCCCAAACCAGGGAACTGATGCCCAGCGTCCAGTAACATGCTTTCGTTGAGCAAAACCAAATCTCTTTCAAGCAGTCTATGCGCGGCGCTTCAACAAAACATGTAACGAAACAAAATCGAATGCGCTACAGGGATATTAACTTCCAGATTTGAGAACACGACATGAGGCGATGAAGTTCGATCCGCTCATAGGAAAAAAAGCTTCGCGGGTTAAGTTAGACTATATTTTTCTCGCGGATAACTTGTTACTCAAAATCCCCAATGCAGCGAAATGAAAAGATTCCTTTGCCCGTTTCCTTTCAAACCGAGTCGTTGTCGTAATTTTCGGATTACACGAAAATACGAGTTATTATCTTACTGAGTCTTCCTTGTTCTTGAAGCATCTCGAATtggaatgtttatttctttcgCTTGTCTATGTTTATCTCGGAGGGTCCCTCTTTCTCAGTGGACTGGCACTACCTCCTCTTACGCCCCCTTTAACTGGAGCCCGGTCATTCATTTGACGCGCTCTCATTGGCCGCCGCTCCTCATCAATCCCAGGTGCCCCTCCAATCGAACGCACTCCTTCGGCAACTAATCGCTGATCGCCATCTTCCACCGACAATTACCGCCTACTTTTCGGAGAGCCTTTTCGGGGAATAGGTAGAAGGAGAGCAGAAAATACTCGCGTTTAATCAGACcgcttgagaaaaaaaaaaaaaaaaactaaatcacttTGCCACGCGGGCTCATAAGAGTAAGTGTAACCCATAATTCTTTGACGAACTTCGCCACTACAGTTTGCATAATTACTTGGCGTAAAATGTGCGGGATACTTCGGTCACAGCGAAATGCAGACGGTTACTTTGGCATAGTGTAGGCTAATCCAACCAAACAAACAGGGTTGAcgtgaatgaaaaacaaactctCAAACCTTGACTCGATGCGCGCGTGAGTATGTATGACAACACACGGAGATGAACTGAAACGCTAGTTCGCGTCCAGTTTCTAACCTGTGTGGTGGTCAGCGTTTGAATAAAGAGCTTGATCGCGTCTCGTGAGTGTTGATGATGGACAcgtcaaaaacaaacaaaggtaTAGCTACGTTATCCTATTGAGATATAAAGCAGCCTACTAAAAACAGATCATTTGATACGAAAACAAGACAGGAGGGTTGTCGGCAGTGTATACACAATTCTCACCGCCATCAACATCATCTTTGCATTTAATACCTTAATTAATTTGCTGCATTAAAAACGCACTAATTCGTAGCTAACACCAAAACACTGCTGAAACATACCGTTTCCTCTGTAACAGAACCATATACCCCACATCATTTTTGAAACACATATACAACAACAGCATAAATTAGACAATTCTTGTAATCTATGGTAGGCTACCACCCAGGCTACATTTTTCCTAACACCGAGCCTTATTTTAGGCACATCTAGACACGCGCGCACAGAGCAGCctactataaatattttaatacacacaAGAACAAATTTCCATTTGAACGCATTCAACTGAGATTACACCCCCCctgttaaaaaacacaatatgatatacctttaattaaaaaaaataaataaatagtgacGTCACGCACCGAGCCCGGTCTTTCCGCGTGAATAAATGAGAGAAtctacattatttaaaacacaagctCAGCGGCATTTCGCGGTCGCAAAACCGGCTTTTCCCGGCCCGCGAAGACACCGCGCACTCCCTGACAATAACCAAACCGTCCAACCGAATCAATATGCAATTATTTCAACTGAAGATCCACCACTGTCTACATCAAACGCTCCACATTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104296 lncRNA downstream 31504 14975412 ~ 14981853 (-) True G70494
XR_006251854.1 lncRNA downstream 70494 14937124 ~ 14942863 (-) True LOC122352110
TU104213 lncRNA downstream 94517 14916800 ~ 14918840 (-) False G70438
TU104214 lncRNA downstream 94517 14916800 ~ 14918840 (-) True G70438
TU104140 lncRNA downstream 418015 14594263 ~ 14595342 (-) True G70396
TU104406 lncRNA upstream 145970 15418999 ~ 15421577 (-) True G70581
XR_006251775.1 lncRNA upstream 355854 15628883 ~ 15638436 (-) True LOC122351574
TU104479 lncRNA upstream 369230 15642259 ~ 15644276 (-) True G70633
TU104518 lncRNA upstream 489354 15762383 ~ 15762669 (-) True G70660
XR_006251840.1 lncRNA upstream 675084 15948113 ~ 15953976 (-) True LOC122352066
XM_043248244.1 mRNA downstream 6687 15001464 ~ 15006670 (-) True klf5b
XM_043249515.1 mRNA downstream 115232 14884111 ~ 14898125 (-) True morc3a
XM_043249516.1 mRNA downstream 119240 14884111 ~ 14894117 (-) False morc3a
XM_043249517.1 mRNA downstream 135701 14875492 ~ 14877656 (-) True vtcn1
XM_043248126.1 mRNA downstream 138665 14868759 ~ 14874692 (-) True trim45
XM_043248277.1 mRNA upstream 116189 15389218 ~ 15399437 (-) False tmtc4
XM_043248276.1 mRNA upstream 116189 15389218 ~ 15399437 (-) True tmtc4
XM_043249240.1 mRNA upstream 152418 15425447 ~ 15490245 (-) False nalcn
XM_043249239.1 mRNA upstream 152418 15425447 ~ 15490245 (-) False nalcn
XM_043249236.1 mRNA upstream 152418 15425447 ~ 15490245 (-) True nalcn
TU104031 other downstream 759581 14196479 ~ 14253776 (-) True G70317
TU103993 other downstream 1073489 13938259 ~ 13939868 (-) True G70294
TU103924 other downstream 1200030 13807822 ~ 13813327 (-) True G70261
TU103524 other downstream 1517712 13473140 ~ 13495645 (-) False gypc
TU104362 other upstream 30074 15303103 ~ 15305975 (-) True G70549
XR_006251733.1 other upstream 116820 15389849 ~ 15399437 (-) False tmtc4
TU104521 other upstream 498392 15771421 ~ 15771864 (-) True G70663
TU104983 other upstream 1544111 16817140 ~ 16823694 (-) False G70986
TU104984 other upstream 1544111 16817140 ~ 16823775 (-) True G70986

Expression Profile