RNA id: XR_006251790.1


Basic Information

Item Value
RNA id XR_006251790.1
length 1812
lncRNA type inter_gene
GC content 0.41
exon number 4
gene id LOC122351681
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 15034819 ~ 15041730 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCGTTCACTCACAACCTTTTCGTGAGCTCGGATGAAACCCGCGCTTCTCCTAGGAACGTTCTCCGAAACTCTGCTTTAATACCTGTCAGGACTTCTCTCGCCTATTACCGTTCATTGTTTTAAAGTACGCTCGAAGTTCACACGTTTCgacaatatgcaaatataaaagAGGCCCACGATGGTTGCCGGGGGATGACATGACATGGCTAATGAGGAAAGGCCCATCAcgagaccacacacacacacacgaagATGAGATCAGAGAGTAAACAGAGACCAAATGTGCTCTAATAAAACTACAGATCTTCTAGCCGGCTCATTTCCATAAAGCAGTTCCTGCACAAATCAGGACTATGGAATCTGCAGTGATAGAAGTCTGTGTACATGCATCTTCCTCCATATGAATACTGGCATAAAAAAGGCGatgaattcatttgtttaaGGGCGTAAAAGTTCTTTACCACAGTTAATCCATTTAATTAACTCAAGTAAAAGATGGATAAAACCCTTTTATCAAAGCTCAACATGTAAGAAATATAATCTGCAGAAATATAATCTCACAGGTTGGCTACAAATTATAACATgcaataagagagagagagacatttatGAATATCATCCAAgctcaatatatataaaacgtatgtatatatgtctaacaaaataacataaattaaattgaatgtttAGCTTCCTAGCATAAACTTGGAACGCCGTGCTTCGTTATGTGCATTAGAGAGATACGCTGCCATGAAATAATTATCAGATGTCAAGCTGTTCTGATGCTCAGTTCCATTTGTGCGGTTGTTATGATGATGCCATCCTGCCTTAcaactcactctctctctctctctctatctctctctctctgtgtgtgcatCCTGTCTGCAAATATATCTGCAAATCTCAGGATTCGCTTGGAAAGATGCCAGCCGAGTGTCTTGTGAGCTGAGCTGGCAAAACGTCCAACCGTATGTAAAATACTGCCCCTCTGGTGATATCAGTCTTTAAAAGAGAgctaatttcatttttcaaaagcagCCGCTTGATAGCTGCACAATTACTCTGCGCTGCCCCGTCCCCTGTTTAAAGCCGCACAGACTTTTATATCAGGCGAGAGATTTGTGGATATCTAAATTGGAAGGTAAACCTGTATAAACAGTAGTAATTACCGTGCCATTCACAGGGCCTGTTGTGCTCGTTCGGCAACAGCCACAGTGATTAAAATGAATCTCCATCGACTTCTCCATTAAATTGCTGGCAGTGGCGATCCTTTGACCTTTCCCATTGATTGAACATAACAATCACAATTCAATTGTAATGCAAAGAGAACATTTGTTATAATGTACATGAGATGCATGAGCCATTTCCTAGAGGGTTGAGGTAATCAATGAAGTGACTTCAAAAGGAACCTGCACAAAGACTCATTCTAGTCAGAATCTGCACTACACATCGAACCTAACGTCTGTTGCATCACTCAATACATTTGCATCCTATAGAAAAAAGATACTGTGATTCCAAAACCCTTGGTGTCATTTCACGCTAGCTACAATAGCCCAAATACTGACGGGTACGATCCGACGTTCATTTGTTTCGATTTTTGCGACGCTAAGCCTTCCCAGAATTCACTGCATGTGCCACAGAGGTCTAAGAAAATGATTACGGCTGACATTTCGCTGAATtatttccctctcttttttttttgcattgttctCTGTGCATCCACTGATTAGTAACATCTGTATGTGACACTGGTGCGGTTCCAGAAACCCTTCTGCTCGTAAAACGCCATTAAACTTGCTGCGAAACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104296 lncRNA downstream 52966 14975412 ~ 14981853 (-) True G70494
XR_006251854.1 lncRNA downstream 91956 14937124 ~ 14942863 (-) True LOC122352110
TU104213 lncRNA downstream 115979 14916800 ~ 14918840 (-) False G70438
TU104214 lncRNA downstream 115979 14916800 ~ 14918840 (-) True G70438
TU104139 lncRNA downstream 439477 14594424 ~ 14595342 (-) False G70396
TU104306 lncRNA upstream 187473 15228296 ~ 15275841 (-) False G70503
TU104358 lncRNA upstream 216165 15256988 ~ 15260906 (-) False LOC122351294
XR_006251729.1 lncRNA upstream 216865 15257688 ~ 15262676 (-) True LOC122351294
TU104305 lncRNA upstream 229006 15269829 ~ 15275841 (-) True G70503
TU104406 lncRNA upstream 378176 15418999 ~ 15421577 (-) True G70581
XM_043248244.1 mRNA downstream 28149 15001464 ~ 15006670 (-) True klf5b
XM_043249515.1 mRNA downstream 136694 14884111 ~ 14898125 (-) True morc3a
XM_043249516.1 mRNA downstream 140702 14884111 ~ 14894117 (-) False morc3a
XM_043249517.1 mRNA downstream 157163 14875492 ~ 14877656 (-) True vtcn1
XM_043248126.1 mRNA downstream 160127 14868759 ~ 14874692 (-) True trim45
XM_043249094.1 mRNA upstream 116281 15157104 ~ 15161278 (-) True gpr18
XM_043249093.1 mRNA upstream 123476 15164299 ~ 15170670 (-) False gpr183a
XM_043249091.1 mRNA upstream 123476 15164299 ~ 15170496 (-) False gpr183a
XM_043249092.1 mRNA upstream 123476 15164299 ~ 15170119 (-) True gpr183a
XM_043248410.1 mRNA upstream 138651 15179474 ~ 15181677 (-) True si:ch211-184m13.4
TU104031 other downstream 781043 14196479 ~ 14253776 (-) True G70317
TU103993 other downstream 1094951 13938259 ~ 13939868 (-) True G70294
TU103924 other downstream 1221492 13807822 ~ 13813327 (-) True G70261
TU103524 other downstream 1539174 13473140 ~ 13495645 (-) False gypc
TU104362 other upstream 262280 15303103 ~ 15305975 (-) True G70549
XR_006251733.1 other upstream 349026 15389849 ~ 15399437 (-) False tmtc4
TU104521 other upstream 730598 15771421 ~ 15771864 (-) True G70663
TU104983 other upstream 1776317 16817140 ~ 16823694 (-) False G70986
TU104984 other upstream 1776317 16817140 ~ 16823775 (-) True G70986

Expression Profile