RNA id: TU104658


Basic Information

Item Value
RNA id TU104658
length 1899
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G70746
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 16203792 ~ 16205690 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGACATTCATAgtgtcacaaaaatatttatatttaagattaaCTGTTCTTCTGAGTTTTCGGTTCGTTAACgtatacacaaaaatgctgatatttttacattgataaTATTGCTAATCTTTATCATCAAatctaaagaaatatttaacgtttaaaagtattaaaataaagctactttaaattgtaatatttcacatatttattttaatgacataaatgcagccttggtgaatgTAAGAGACTTCACTTAAAGTGAACGTTTACACATGCAGCAGCACCCTAGCTTTCAGTTTCTATTGCATACAGAAATACTTCAGACACACAGCACCACCggtcagacaaacacacacactatgcaTCACTCTCAGACACATAACTGGGCACTGATCCCGACTGCAGTCACGCAGAGCCGAGCGGGCAGGACCTGACCTACCACAGCTGCTGGGAAAAATCCGGAAAAACAAAACGGCAAATGAGGAACCAAAAGTTTTCCATTGGCCCATCTCCGCCAACTCGCATAGAGAGGCAGAGCGAAAGAGCTGGACGAGCAACACAGAGCAGAAGACACAGAGGACATCTTCACCacataaaaggaaatatatttaaaaaggaaaaaaaaaaacacgctcaTACCGAAGAACTGCTCTGTCATCGGTAGAGCCATTTACACAGGGCAGTTTGAGTAAACAGTTTGTCATGTACAGAATCATTCAGATGAACAGACGTGTTGTCTTTTCGCCTCGCAGACGCACCTCTACTTCAAACAACTGCACGGAATAAAAATGAGATTTCTGATTCGACATTAATACTCTCAAACGACATTTCATCCTGAACCCCTTAGtcttacaacaaataaaaatttagaccatttacaaacacattttactaCATGATTggtaaaaataaactgtttacaAAGTTGCCAAAATGCAAGGGATGTGCataggtctttttttttttttttttttctctctctctcgtctcttcGTCACCGGCTCCACCTGTTTGAATGTGTTCATCCAGAAGAATGGAATGTTTTCTGCTGTGGGTGACGGTCTGAACACAGCTAACACTGACAGCATGGACGCCCGTGAATGTTCACATGCATGAGATCTCATTCAAATctctaaaacatttatgtacGTCTTTAGAGAGACAGTATCCACGTGTAAATGAGGGTGAAATGGggaaaaacaaggcaaaaaaaacaaaaaaaacccccccGAAACGAAACGGCTGAAAGCTGAATCGCAGGGTTGTGCTAAAGCAGCTGGGCTCTGCCGCATGGATAATGTGGGATTATGTATGATGGCTGAGTTAATGGACGGCTGGACAGATGGAATACCGCACTTTCAGTCTGGtgcaaacagaaaaatgtgccgaaaaactacaaaaatattcCTTTCAGGAAAATGCGCCATGTAGgatactgtctctttaaatcaaACGTCTACAAAATGTTGCCTCCTAGCTATATAGACATGAcaatatttagtaatttattttattgattttttttcattaatacaaCACTACGTCTAGGTAGTTTGTGAAGGGCCAAGACTGGGCTCACTGCAGGTACATCGATGTTGTTGTTAAACGTCAGAGGTGGGTTTCTGTTTGCATCATGGGAAAGTTGCAAGTTTTTTTCCTTCTTGCAGAGATGCACCGCAGAGTGTGAGGTTATGAAGGGTGTAAGGTTACAGGTTGATGGGTTTGTTGTTTTAGTAGACCCAGGACACTGGAACCCACTGGGCCGTGGTGCAAACCAGGTCTATGGCTTCCTCCAGGAGCCGAATAGTCTCGTCAATCTCATTATTTATGATGGTTTGGTCAAAATAGTGTGCATATGTCTTCTGGAGGATCTCAGACTCCTTCTGCAGCCTCTGTAATGACTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104651 lncRNA upstream 20109 16154223 ~ 16183683 (+) False G70743
TU104653 lncRNA upstream 20109 16167596 ~ 16183683 (+) True G70743
TU104648 lncRNA upstream 20109 16182368 ~ 16183683 (+) False G70743
XR_006251858.1 lncRNA upstream 171624 16030874 ~ 16032168 (+) True LOC122352145
TU104581 lncRNA upstream 191638 15974481 ~ 16012154 (+) True G70700
TU104666 lncRNA downstream 630 16206320 ~ 16206691 (+) True G70753
TU104659 lncRNA downstream 2415 16208105 ~ 16210772 (+) True G70747
TU104660 lncRNA downstream 7482 16213172 ~ 16215227 (+) True G70748
TU104668 lncRNA downstream 14207 16219897 ~ 16220235 (+) True G70755
TU104671 lncRNA downstream 16521 16222211 ~ 16222583 (+) True G70758
XM_043248228.1 mRNA upstream 653 16197730 ~ 16203139 (+) True nyx
XM_043248214.1 mRNA upstream 6303 16185527 ~ 16197489 (+) False ddx3xa
XM_043248216.1 mRNA upstream 6303 16185528 ~ 16197489 (+) False ddx3xa
XM_043248218.1 mRNA upstream 6303 16185528 ~ 16197489 (+) False ddx3xa
XM_043248225.1 mRNA upstream 6303 16185528 ~ 16197489 (+) False ddx3xa
XM_043249461.1 mRNA downstream 24848 16230538 ~ 16233056 (+) True LOC122352000
XM_043249462.1 mRNA downstream 27587 16233277 ~ 16236288 (+) True LOC122352001
XM_043249463.1 mRNA downstream 31516 16237206 ~ 16239653 (+) False LOC122352002
XM_043249464.1 mRNA downstream 31869 16237559 ~ 16239653 (+) True LOC122352002
XM_043249465.1 mRNA downstream 31869 16237559 ~ 16239653 (+) False LOC122352002
TU104501 other upstream 457686 15734592 ~ 15746106 (+) False plcl1
TU104429 other upstream 492615 15708236 ~ 15711177 (+) False LOC122351678
XR_006251807.1 other upstream 778753 15401128 ~ 15425039 (+) False si:ch211-168k14.2
XR_006251758.1 other upstream 2521801 13676163 ~ 13681991 (+) False ccnt2a
unassigned_transcript_1467 other upstream 2779966 13423714 ~ 13423826 (+) True trnal-caa
TU104743 other downstream 522817 16728507 ~ 16731361 (+) True G70814
TU104753 other downstream 540209 16745899 ~ 16749695 (+) False mpc2b
TU105078 other downstream 711071 16916761 ~ 16919290 (+) True si:ch211-218d20.15
TU105185 other downstream 998107 17203797 ~ 17206505 (+) False jam2b
TU105274 other downstream 1133437 17339127 ~ 17339622 (+) True G71130

Expression Profile