RNA id: TU104694


Basic Information

Item Value
RNA id TU104694
length 481
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id LOC122351146
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 16506720 ~ 16519350 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTTAGTTGATCCTGATAAGTGCCGGTCATCATagttgtaaacatttttaaacataatgcGGTTGGCATCATGACAACTTTGTGTTTCTAGatttgaaCAATTTCTGGGAGAAAAAGTACTTACCTTGGTTAAACATCATCTTCACTTAAATAAGTGGACAtcacagaaaaaggaaaagtcACACTTTTGCACCAAAATCAGGACTGGCTTCAATTAGCGGTAATCAGCCAGAGGGTCTTTCTCCATGACAAATTTATTCAGCTGCACTCCTCGCAGCTGCACGCAAGGATGTAACGGTAAGTAGCGGTTATCCGTGTCCCGCCCGAGCATCTCAGACGTACCGCCTTCAGTTTGGAGGTATGTGGACGGCAGCAGAAACACGTGCTTTTGAAAGGCTGCTTCAGGACGGAGCTGAAAGAGATCAGAGGGTCTGAGCGGGACGTGTGGCTGCAGTGACCCTCGCATCGAGCCAGGAGAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104680 lncRNA upstream 53942 16452306 ~ 16452818 (+) True G70767
TU104679 lncRNA upstream 116845 16389646 ~ 16389915 (+) True G70766
TU104677 lncRNA upstream 173711 16332644 ~ 16333049 (+) True G70764
TU104670 lncRNA upstream 282820 16222766 ~ 16223940 (+) True G70757
TU104671 lncRNA upstream 284177 16222211 ~ 16222583 (+) True G70758
TU104715 lncRNA downstream 70498 16581192 ~ 16581462 (+) True G70791
TU104717 lncRNA downstream 71234 16581928 ~ 16583350 (+) True G70792
TU104718 lncRNA downstream 73071 16583765 ~ 16584095 (+) True G70793
XR_006251711.1 lncRNA downstream 75947 16586641 ~ 16599872 (+) True LOC122351189
TU104719 lncRNA downstream 83424 16594118 ~ 16594380 (+) True G70794
XM_043249463.1 mRNA upstream 267107 16237206 ~ 16239653 (+) False LOC122352002
XM_043249464.1 mRNA upstream 267107 16237559 ~ 16239653 (+) True LOC122352002
XM_043249465.1 mRNA upstream 267107 16237559 ~ 16239653 (+) False LOC122352002
XM_043249462.1 mRNA upstream 270472 16233277 ~ 16236288 (+) True LOC122352001
XM_043249461.1 mRNA upstream 273704 16230538 ~ 16233056 (+) True LOC122352000
XM_043248770.1 mRNA downstream 30538 16541232 ~ 16580313 (+) False kdm6a
XM_043248772.1 mRNA downstream 30538 16541232 ~ 16580313 (+) False kdm6a
XM_043248769.1 mRNA downstream 30539 16541233 ~ 16580313 (+) True kdm6a
XM_043248771.1 mRNA downstream 30539 16541233 ~ 16580313 (+) False kdm6a
XM_043248773.1 mRNA downstream 30540 16541234 ~ 16580313 (+) False kdm6a
TU104501 other upstream 760654 15734592 ~ 15746106 (+) False plcl1
TU104429 other upstream 795583 15708236 ~ 15711177 (+) False LOC122351678
XR_006251807.1 other upstream 1081721 15401128 ~ 15425039 (+) False si:ch211-168k14.2
XR_006251758.1 other upstream 2824769 13676163 ~ 13681991 (+) False ccnt2a
unassigned_transcript_1467 other upstream 3082934 13423714 ~ 13423826 (+) True trnal-caa
TU104743 other downstream 217813 16728507 ~ 16731361 (+) True G70814
TU104753 other downstream 235205 16745899 ~ 16749695 (+) False mpc2b
TU105078 other downstream 406067 16916761 ~ 16919290 (+) True si:ch211-218d20.15
TU105185 other downstream 693103 17203797 ~ 17206505 (+) False jam2b
TU105274 other downstream 828433 17339127 ~ 17339622 (+) True G71130

Expression Profile