RNA id: TU104719


Basic Information

Item Value
RNA id TU104719
length 263
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G70794
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 16594118 ~ 16594380 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCCAAACcaatataaattgtttttattgtacactattaaaaattaaaagcattatgTGTTGGAACAAGTAAATGTAGATTTGGTtgcactgttcctttaagagcaGTGGATCTGATGAAAGAGCATCGCAATGACATAGTTTGTGTCCTGCTACATCAGGGTCAAATGTAACATGATGTCAAAGGCAAAACATTCATGATGACTCGTTAGTCAAATCTGACTTTacaatgacattattattagtcTTCAAACCTGATGCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104718 lncRNA upstream 10023 16583765 ~ 16584095 (+) True G70793
TU104717 lncRNA upstream 10768 16581928 ~ 16583350 (+) True G70792
TU104715 lncRNA upstream 12656 16581192 ~ 16581462 (+) True G70791
TU104694 lncRNA upstream 83424 16506760 ~ 16510694 (+) False LOC122351146
XR_006251704.1 lncRNA upstream 83543 16506720 ~ 16510575 (+) False LOC122351146
TU104726 lncRNA downstream 11016 16605396 ~ 16606343 (+) True G70800
TU104728 lncRNA downstream 15488 16609868 ~ 16610120 (+) True G70802
TU104729 lncRNA downstream 20305 16614685 ~ 16614917 (+) True G70803
TU104730 lncRNA downstream 21158 16615538 ~ 16616064 (+) True G70804
TU104742 lncRNA downstream 135275 16729655 ~ 16731361 (+) False G70814
XM_043248773.1 mRNA upstream 13805 16541234 ~ 16580313 (+) False kdm6a
XM_043249529.1 mRNA downstream 90366 16684746 ~ 16694462 (+) True ccdc80
XM_043249530.1 mRNA downstream 90366 16684746 ~ 16694462 (+) False ccdc80
XM_043249381.1 mRNA downstream 105385 16699765 ~ 16713826 (+) True f5
XM_043249389.1 mRNA downstream 119594 16713974 ~ 16720587 (+) True gpr161a
XM_043249499.1 mRNA downstream 151513 16745893 ~ 16749701 (+) True mpc2b
TU104501 other upstream 848012 15734592 ~ 15746106 (+) False plcl1
TU104429 other upstream 882941 15708236 ~ 15711177 (+) False LOC122351678
XR_006251807.1 other upstream 1169079 15401128 ~ 15425039 (+) False si:ch211-168k14.2
XR_006251758.1 other upstream 2912127 13676163 ~ 13681991 (+) False ccnt2a
unassigned_transcript_1467 other upstream 3170292 13423714 ~ 13423826 (+) True trnal-caa
TU104743 other downstream 134127 16728507 ~ 16731361 (+) True G70814
TU104753 other downstream 151519 16745899 ~ 16749695 (+) False mpc2b
TU105078 other downstream 322381 16916761 ~ 16919290 (+) True si:ch211-218d20.15
TU105185 other downstream 609417 17203797 ~ 17206505 (+) False jam2b
TU105274 other downstream 744747 17339127 ~ 17339622 (+) True G71130

Expression Profile