RNA id: XM_043249382.1


Basic Information

Item Value
RNA id XM_043249382.1
length 4191
RNA type mRNA
GC content 0.50
exon number 21
gene id dcaf6
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 16720804 ~ 16746222 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCTATTGGCTTTGGGCTCGAAATGGATTTGACGTACCAGAGCAGCAGAGGCTAAAGCGGATAGCCAAACAAGAAGCGCAATATTTTACTACACCTCAAAGCAATCATGCACAAAGTGTCGGAAACGGATCGTCGCGGGGGTGTCGATATCGAGGAGTAATATTTTCTCATTCATCCACTATCAGTTGTCGATGAACTTATAGGCGCTGTAAAGGGAAACAATAATAACCGAGCGCCACTGAAGgaagacaaacacacaagaaAAGCGTCTGCTCTCCTTTTCATCCATGCATGTCTCAACATTAGAGGTTTAAACACCATGTCCTGCTCTGGCAACCTCATTTGGGATGTACGAAAACGCACTATTGGATGCACAGATCCATATGCGGTCAGGACAAATTATTTAGgCAGAAGAGAGTTTGTGCAACGACTGAAACTCGAAGCAGTTCTCAATGTGCACGATGGATGCgtTAACACCATATCCTGGAATGAAACAGGAGAATACATCTTATCAGGTTCCGATGACACAAACTTGGTTATCACAAACCCTTACAACAGAAAGGTCAAGACGACTATTCGTTCAGGACACCGGGCCAACATCTTCAGCGCAAAGTTCATGCCCCACACTAATGATCAACAGATAGTGTCCTGCTCAGGAGATGGCATAattttctacacacacacagaaaagagCCAAGAAATCAACAGGCAGTGCCAGTTCACCTGCCATTATGGCACTGCTTATGAGATAATGACTGTGCCAAATGACCCATATACCTTCTTGTCCTGTGGAGAAGATGGTACAGTGAGGTGGTTTGACTTGCGGATGAAGACGAGCTGCACAAAAGAAGACTGTAAAGATgacattttgattaattgccGGAGAGCCGCTACCTCAATATCCATTTGCCCACTGGTCCCCTATTATCTTGCCGTGGGCTGTTCAGACAGCTCAGTGAGGATCTATGACAGAAGAATGCTGGGAACAAGAGCTACGGGTAATTACATGGGCAGAGGGACGACCGGCATGTGTGTACGTTTTGTCCCAGCCCACCTGTCCACCAAATCCTGCCGCGTCACCTCTCTGTGTTACAGTGAAGATGGACAAGAAGTGCTGGTCAGTTACTCCTCTGACTACATCTACCTGTTTGACCCCAAAGATGACCAGGCCAGGGAGCTCAAGGGCCCTTCTGAAGAGCGGCGAGAGGAGCTGAGGCAGCCCCCGGTCAAACGCTTGCGTCTGAGAGGCGACTGGTCGGACACAGGACCGCGTGCTCGGCCTGAGAGTGAGAGGGAGCGTGATGGAGAACAGAGTCCGAATGTGTCGCTCATGCAGAGGATGTCGGACATGTTATCACGCTGGTTTGAAGAGGCAAGCGAGGCCCAGAGCAGCAGAGCACGCCCTCAAACTCGGCCCAGAGGTACGGCTGCTCGACCAGAGGGAACATCTTCAacctcagaaacacacactcaggcACAAGAGCCCACTGAGGTCTCAGCTGAAGGAGTGATAGAGATGGAGACGCCTTCTTCTGATCCTCCGCCTACACCTGCTGCTCTTCCTGCACCTTCAGAGCCTCTCCCCAAGTCtatctcctcctcctcctcctcaggcTCCTCCTCCACTGTGACAGCTCCTGCCCCGACCAGCTCATCCTCCCTGGAGAGCGCTGCTTCCTCCTCTCTCCTTTCATCCCCAGACACAGAGCAGAAGAGCCAGGATGAAGTTACGCCTACTCCCTCGGCTACACCCACTCCTTCAGCAACACCCACCCCATCTAGAGAGGCAGCTTTATCTGAATATGGTCCTCGCAGGCTGCCGGTAAGTTTAGTGTGTAGACGTTTGCAGAGGCTGCTTCTCCTGTCTGACCCCCCAGGACAGGGCAGACGCTCAGTCCCTTCTGTTCCCGTGACCTCCAGCACAGAGAGCTCAGCCCAacaggctgctgctgctgctgacgCAGGCTCCCCTGCAGattCTCCCTCATCTGTGGTAAACAAACAGCTTGGATCCATGACTCTGGATGAGGAGCAGGGAGGTGCAGAAGCAGCGGGACATGTATCCAGTGATCAGAGTACAGGTGTCAGTGAAGCTTCCCCAGACACTACAGAAACTGTGCCATCCACATCAGCACCTTCACTTGGCAACAACAGCGGGAGCAGCAGCACTCCTCCAGGGCCCGCGCGGACCGGCACAGCAGAACCTGTCCTTAGTCTGCACTACAGCACTGAAGGCACCACCACTAGCACCATCAAACTGGACTTCACAGATGAGTGGAGCAGTCCGGCTTCCAGTGCCAAAGGCAGCAGTGTAGGACAGAAGCCTGGGGAGATGGGTGAGAGTCAGACCAGAGAGGAGGAGCCCACAGGTCAAACCTCAGAGAAAACTTCAAACTCACCCTCAGAGAGTCAACCTATATCCGATGGGGGCAAAATTGCAGACGGTGGCACGGAAAAGGCCTCCTTCAGCTCTCAAAACAGCACGCCTCTGGCAGCACCACCAGAGGGCCTGTCCCCTGAAGACACGGCTCACTCCAGCGCTCCATCAGAGGAGCTCCAGGCTGCTGGTTCGGCGGAGCTGAGCGAGCGGTGCAGGAGGAGCGAGACCGCTGGAACGGGTGGCCAGGGTTCGACTCAACCGCCCCGCAACCAGGACTCTGACGACAGCGACGACGACCCCATCCTTATCCCTTCAGCCAGATTTAATTACAGAGGATCAGCTGTAGGTGATAGGATGATAAGACGCTCTGCCGCGGCTCGGATCCAGGAGCTGTTCCGCAGAAGAAAAGAACGGAGAGAGATGGAAGAGAGTGAGACTCAGAATATCAGGAGACCCTCTGTCAAGATGATGTACAAGGGCCATCGCAACTCCAGGACCATGATTAAGGAGTCGTGTTTCTGGGGGAATAACTTTGTGATGAGCGGTTCGGATTGCGGCCATATCTTCATCTGGGACAGACACACAGGAGAGCACCTGATGCTGCTGGAGGCCGACAACCATGTGGTCAACTGCCTACAGCCTCACCCTTATGATCCCAttCTTGCTTCATCTGGAATTGACTATGACATTAAGCTGTGGTCGCCTTTAGAACAGTCACCGTCATTTAACAGGGTCCTTGCTGAAGAGGTGATTGCTCGTAACGAGTTAATGCTGGAAGAGACGAGGAACACCATCACCGTCCCTGCTTCCTTCATGCTCCGAATGCTGGCATCATTAAATCACATCAGAACAGACCGCGTGGAGGGTGATCGCTCGGAAGGCTCTGGACAAGAGAACGAGGATGAACAGTAGCCCTTCTGCTACAAGTGAATGGTTTTTTTTGCTACAGTGCACTTGAGCATTTCAGATTTGTACGAGTTACAAAATAGAGTATTTCCTTGTTAGTTCAGTTTTtggcattattttttaatgagacTTTTCTTACTAATTACTCTACGTGAGAGTAAACTGCGACTGGGGAGTTCACGCAAACAGGATGATACGTAAGAAACTGAGAGATGCGACTAAACAGCTGGTGCTTGAAAGTATTTAAGTGCAATATTCATTTGTTAAACGGTTGAGCTTGGAAAGGTGTTCAGTGTGAAACTTTATTGTAGCCTCAAATGAAGAACTCTGATGTTTGTATACCGGGATTTATGCATGTCAAACATGAGTTTGCAGAAAACACGTTCTTAGTCTTTACCAATGTtggctcttttttttgtcattactaAATCTTGCGTTGCACAGGGATCTTCTGCCTAACCCCAGTTACAGGTACTATTGCAATATTTCTTTATCCAAACCAGCCATTATAAAAATTGTTACACTGCAGAATGTttataaaagtttattaaaatgagaaCCGTTTTTGACTCGGTCTATACATAAAACCCACTGCTGTCTTGCCAAATGGCTCTAGCATTAGTTGGCAGGtcgtgtttctctctctcctaaCAGCACAGATGGCCTTTGTTGTGGCAGCTGTTGGCTTGAGCGTTCTGCTAAGTGACTAGTGATCGCTGGGAAAAGCTAAGATGAAATATCTCCTCGTCTAATAGCGTGCCATTCTATGCTAACCTCATTCAGCAGCACTGTTAAGGAATGTAAGCCATCTTTTTAACTGTTTGTCCACAGATTTTCAGATTAAGTTCCAGTTCCTTTTCAATTCATGTACCAGAGACATTAAATGTGTTGTGCTTCAAACAAAA

Function

GO: NA

KEGG:

id description
K11795 DCAF6, IQWD1, NRIP, ARCAP; DDB1- and CUL4-associated factor 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104956 lncRNA downstream 231 16719515 ~ 16720573 (-) True G70965
TU104957 lncRNA downstream 3720 16715522 ~ 16717084 (-) True G70966
TU104958 lncRNA downstream 5702 16630486 ~ 16715102 (-) True G70967
TU104973 lncRNA upstream 6219 16751035 ~ 16751938 (-) True G70979
TU104994 lncRNA upstream 82242 16827058 ~ 16829659 (-) True G70991
TU105027 lncRNA upstream 120462 16865278 ~ 16865589 (-) True G71005
TU105028 lncRNA upstream 121362 16866178 ~ 16866422 (-) True G71006
TU104975 lncRNA upstream 121676 16866492 ~ 16867522 (-) True G70981
XM_043248032.1 mRNA downstream 22165 16694754 ~ 16698639 (-) False slc35a5
XM_043248031.1 mRNA downstream 22267 16694754 ~ 16698537 (-) True slc35a5
XM_043248778.1 mRNA downstream 136743 16579731 ~ 16584061 (-) True dipk2b
XM_043248169.1 mRNA downstream 180153 16538368 ~ 16540651 (-) True fundc1
XM_043248411.1 mRNA downstream 182729 16526525 ~ 16538075 (-) True efhc2
XM_043248104.1 mRNA upstream 7187 16752003 ~ 16760172 (-) False LOC122351201
XM_043248105.1 mRNA upstream 7187 16752003 ~ 16760172 (-) True LOC122351201
XM_043249605.1 mRNA upstream 17057 16761873 ~ 16767185 (-) True LOC122352097
XM_043248994.1 mRNA upstream 141937 16886753 ~ 16889547 (-) True cd247l
XM_043249544.1 mRNA upstream 153847 16898663 ~ 16902174 (-) True grtp1b
TU104521 other downstream 948940 15771421 ~ 15771864 (-) True G70663
XR_006251733.1 other downstream 1321367 15389849 ~ 15399437 (-) False tmtc4
TU104362 other downstream 1414829 15303103 ~ 15305975 (-) True G70549
TU104031 other downstream 2467028 14196479 ~ 14253776 (-) True G70317
TU103993 other downstream 2780936 13938259 ~ 13939868 (-) True G70294
TU104983 other upstream 72324 16817140 ~ 16823694 (-) False G70986
TU104984 other upstream 72324 16817140 ~ 16823775 (-) True G70986
TU105258 other upstream 491056 17235872 ~ 17255491 (-) True G71118
XR_006251863.1 other upstream 1824939 18569755 ~ 18569882 (-) True LOC122352185
TU106113 other upstream 2975682 19720498 ~ 19721737 (-) False ankar

Expression Profile