RNA id: TU104975



Basic Information


Item Value
RNA id TU104975
length 1031
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G70981
representative True

Chromosome Information


Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 16866492 ~ 16867522 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CTAAATtaacagttcatccaaaaaatctATCATCATTTAATCCTTGGTGTCATTCTATCCCAGTATGACTTTCACTCTCCTGTAGAACACCAGAgaaaatcacttaaaaaaatcttgtggtttttttttttgttaagtaatacaggtttggaacaaagcgagggtgagtaagtgatgactgaatttctgaatgaattatACATGCTCAAATCCCTGACTGGAGTAAAAGCGGTTACGTTTAATTTTCACCTGTTAACTATGAAAATATGCTGAAATGATTTGAGaatcattttagaaataaatagcaatatCTCATACATTTGTTGCCACTGGACTTGGGGAAAAAGCGCATTACTGAAATCTAAATTTCATTCAAGATTAAGAGGTCTGCCACAGTCCAACGTAAAACCAATCACAATAAGTgctccatttttaaaaatgttttatggaagAATTATCTATTCTGTtgagttacatttttaacaagaTTCTGCATACCTCGGGATAGTGCCATAAAAGTAATAGGGCTACATTAACTGTTAtggtgcttttgcattttaacatgGGCAGCAAAATCATACTGAACATTTGCAAGCCAAACAAGATAGCAAATAGCAGCTGAATATATAGCAAAAAAGCTGATCCCAAAGACAGAGGTGTGGAAGATTATTGCTAGGTCGCACCAGTTCCTTAAGAAGTTTAGCCTcgccttttctttcttctcactGGGCAGATGTGCGATAGGATGAAGTTAACCATGTTTGATATAATGTCAGGTGGAGGGTGTAGCTGATGGGGGTGATGGTGGGCGAGTGTCATCTCCCAAGCATCCACCATCTGGACGTTCAGACCTTTAAACATGGCTCGGAGAACTGCGTCAAGCTGTTGGGAGAACCAGTCGCTGTTAAACAGGCTGGACTCGGGGTCCAGTTTCTGGAGGTTGGCTGTGCGGATCAGCACCAAAGTCGCCGGTTCGCGGTTCAGTAGTCGAATCACCGCCCTGCGGATGTGGCGCAGGCGGCGTATGTACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU105028 lncRNA downstream 70 16866178 ~ 16866422 (-) True G71006
TU105027 lncRNA downstream 903 16865278 ~ 16865589 (-) True G71005
TU104994 lncRNA downstream 36833 16827058 ~ 16829659 (-) True G70991
TU104973 lncRNA downstream 114554 16751035 ~ 16751938 (-) True G70979
TU104942 lncRNA downstream 120270 16727147 ~ 16746222 (-) False dcaf6
TU105039 lncRNA upstream 19283 16886805 ~ 16889429 (-) False cd247l
TU105081 lncRNA upstream 49702 16917224 ~ 16919314 (-) True G71035
TU105257 lncRNA upstream 345354 17212876 ~ 17297150 (-) True G71117
TU105275 lncRNA upstream 471598 17339120 ~ 17339530 (-) True G71131
TU105278 lncRNA upstream 473023 17340545 ~ 17340915 (-) True G71134
XM_043249605.1 mRNA downstream 99307 16761873 ~ 16767185 (-) True LOC122352097
XM_043248104.1 mRNA downstream 106320 16752003 ~ 16760172 (-) False LOC122351201
XM_043248105.1 mRNA downstream 106320 16752003 ~ 16760172 (-) True LOC122351201
XM_043249382.1 mRNA downstream 121676 16720804 ~ 16744816 (-) True dcaf6
XM_043248994.1 mRNA upstream 19231 16886753 ~ 16889547 (-) True cd247l
XM_043249544.1 mRNA upstream 31141 16898663 ~ 16902174 (-) True grtp1b
XM_043248949.1 mRNA upstream 70762 16938284 ~ 16954349 (-) False ppp2r3b
XM_043248948.1 mRNA upstream 70762 16938284 ~ 16954349 (-) True ppp2r3b
XM_043248953.1 mRNA upstream 70762 16938284 ~ 16947137 (-) False ppp2r3b
TU104984 other downstream 42717 16817140 ~ 16823775 (-) True G70986
TU104983 other downstream 42798 16817140 ~ 16823694 (-) False G70986
TU104521 other downstream 1094628 15771421 ~ 15771864 (-) True G70663
XR_006251733.1 other downstream 1467055 15389849 ~ 15399437 (-) False tmtc4
TU104362 other downstream 1560517 15303103 ~ 15305975 (-) True G70549
TU105258 other upstream 368350 17235872 ~ 17255491 (-) True G71118
XR_006251863.1 other upstream 1702233 18569755 ~ 18569882 (-) True LOC122352185
TU106113 other upstream 2852976 19720498 ~ 19721737 (-) False ankar
TU106134 other upstream 2928735 19796257 ~ 19804599 (-) False glsb
XR_006251780.1 other upstream 3014302 19881824 ~ 19893315 (-) False mfsd6b

Expression Profile