RNA id: TU105081


Basic Information

Item Value
RNA id TU105081
length 1682
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id G71035
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 16917224 ~ 16919314 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTTTAAGTGATAGCAtgataaaattataatgtatataatcaaatataatcaataatgttataataaattctaatttgtaataaaaataaatccacaaaTTTATAAGGTATTCGCTTATGATCAACGTGTTTGAGTTTATTTTGCTAGCACCATCATATACAGAATGGAAAGCAACAGTCACTTCAAGTATACAgatgcattataaaatacattattgcacaaggtgttttatttcattcattaaaaaacatgagccaacaatacaaaaaaatagctaaaatggtttaaataaattactttttagtgGTAGTACTCAGAAcgtaaacatttttcttaaaaatttttatgGTCTTAAAATATCTGGATCGCATTATCACAGTCATATCTGTGGGGTGTacagatgaataaatcaaaagaaataaaaagaaacatttttcatagGAATCACTTCATTCTGTGACAATTTCTCACCGTCCACTTCAGGCACTGTAGATCCAGCGGTTACGAGAGGTTAGAGACTATTTCCATGACGGGATTGAGGTCTTCTGTGAGTTCTTCTGCGAGTGACAGTACCGTTGATATCACGTTTTGTGTTAAATCAGACAGCCTGTGAAAAGTACTTTCATTTATTATGCTGGATTACTTTTGGCTGATTCTAATGGAACTGAAAGCACTCTCACCAGCTCGCGTGATGCGCTGGCAACTGAGGATCCAGTCTGGACCCTTCCTCAGTTGAAAGAGACGTCTTCAGCTGCTTGAAATTACTCTCAATATCCTTTCTTATGATGGACAACGGCAAAATATCGTTGAGAGAGTTTAGGACTTGCTGTACCAGAAACAAACAACTTTGAACGATTTGCAGAATCAAATTTTTTTGTGGACAGATCACGTGGATTATACTGATTTGATTGTGGAACAAGTCAAAACAAACTCACGTAAATTGCTGATAGCTGATGTGCGACATACTTATGACTGCCCAGATGTTTCACATCTTCATCTAACTGCTGACTGAGAACCAGCAGCTGATTCAGCCTCCCAATATGAGGAAAATACATCCGAAGGTGGTCTTTCCAACATGTCAATAGGGCTGCCGTGTATCATATAAACTTCCACTCGAGGGAACAGAGCAGACAATCCTATAACATCCAAATACTCCTAAAGAAATAGAGATAAGCGCAATCACATCATTCAAAAAATGTGAACTGGTTTAAGAGGAATTGGTGAGATTGATTACCTCAAGCTGAAGCACCGGTTCATTGAGATGTTCAAGGCACTGGTTCATCTGATATATTATCTCTGCCCCTACACACAAATTCATTGattgtacatacatttataaatttcattttgattttgagtaacaaatatatatatatatatatatatatatatatatatattattttaatcctAAACTTACCTTGTTTTTGAAAACAATCAGACTCTTCAGGACTTGTGTCCTGCTTAAGATGCTCCTGAAACTGCTAATTCAGATTAGATACTTGAATGAGACAAACACAAGAGTATGTTCAAAGACCTGAGCATCAGCGTAAGCGTCTCACCTGATGGACCTGAGCTCTAATCAGTAGATCCAGCTGGCTGCAGAGACACAGCATCTCCAGTGCCACCTGCTCACTGCTCAGGTGGATGGGCATCAAGGGCTTGCTCACGCACACCTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105039 lncRNA downstream 27795 16886805 ~ 16889429 (-) False cd247l
TU104975 lncRNA downstream 49702 16866492 ~ 16867522 (-) True G70981
TU105028 lncRNA downstream 50802 16866178 ~ 16866422 (-) True G71006
TU105027 lncRNA downstream 51635 16865278 ~ 16865589 (-) True G71005
TU104994 lncRNA downstream 87565 16827058 ~ 16829659 (-) True G70991
TU105257 lncRNA upstream 293562 17212876 ~ 17297150 (-) True G71117
TU105275 lncRNA upstream 419806 17339120 ~ 17339530 (-) True G71131
TU105278 lncRNA upstream 421231 17340545 ~ 17340915 (-) True G71134
XR_006251856.1 lncRNA upstream 424402 17343716 ~ 17351712 (-) True LOC122352115
TU105286 lncRNA upstream 444873 17364187 ~ 17368255 (-) False ncam2
XM_043249544.1 mRNA downstream 15050 16898663 ~ 16902174 (-) True grtp1b
XM_043248994.1 mRNA downstream 27677 16886753 ~ 16889547 (-) True cd247l
XM_043249605.1 mRNA downstream 150039 16761873 ~ 16767185 (-) True LOC122352097
XM_043248104.1 mRNA downstream 157052 16752003 ~ 16760172 (-) False LOC122351201
XM_043248105.1 mRNA downstream 157052 16752003 ~ 16760172 (-) True LOC122351201
XM_043248949.1 mRNA upstream 18970 16938284 ~ 16954349 (-) False ppp2r3b
XM_043248948.1 mRNA upstream 18970 16938284 ~ 16954349 (-) True ppp2r3b
XM_043248953.1 mRNA upstream 18970 16938284 ~ 16947137 (-) False ppp2r3b
XM_043248952.1 mRNA upstream 19686 16939000 ~ 16954349 (-) False ppp2r3b
XM_043248951.1 mRNA upstream 19686 16939000 ~ 16954349 (-) False ppp2r3b
TU104984 other downstream 93449 16817140 ~ 16823775 (-) True G70986
TU104983 other downstream 93530 16817140 ~ 16823694 (-) False G70986
TU104521 other downstream 1145360 15771421 ~ 15771864 (-) True G70663
XR_006251733.1 other downstream 1517787 15389849 ~ 15399437 (-) False tmtc4
TU104362 other downstream 1611249 15303103 ~ 15305975 (-) True G70549
TU105258 other upstream 316558 17235872 ~ 17255491 (-) True G71118
XR_006251863.1 other upstream 1650441 18569755 ~ 18569882 (-) True LOC122352185
TU106113 other upstream 2801184 19720498 ~ 19721737 (-) False ankar
TU106134 other upstream 2876943 19796257 ~ 19804599 (-) False glsb
XR_006251780.1 other upstream 2962510 19881824 ~ 19893315 (-) False mfsd6b

Expression Profile