RNA id: TU105185


Basic Information

Item Value
RNA id TU105185
length 608
RNA type TUCP
GC content 0.50
exon number 5
gene id jam2b
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 17203797 ~ 17208220 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGCCTCAGACTCTCCACGCGCTCCTGTAGCAGCAGGACAATCTGAAGATGAGCACAACGCTTACCTTCCCGCTCTTCTCATGCTGCTCTACTTTCCCAGCTCAGATCCTGTTACTGTGACGACAAGCAAAGCCAAAGTGGAGGTACACGAAAACACAAATGCTGTCCTGTCCTGTGAGTTCAGGACAGAGAAAGAAACCAACCCACGAGTTGAATGGAAGAAAAGAGGCAAAGATGTTtcatatgtttattttgatgggGATTTTACAGGTTCATTTAAGGGCCGTGCATCCATCGATGGAGCGACAATGACCCTCCGTGGTGTTACACAGAAAGACTCAGGAGTGTATCATTGCGAAGTCACAGCCCGTCAGGACAAAATCAAGCTGGGGGAGGTCACTGTAATCCTCAATGTGCTTGTGCCACCGCATGCGCCATCATGTGAGGTCCCAGAAACAGTCATGAGAGGATTTTCTGCAGAGCTCCGCTGTAAAGACAAACTGAGTGTTCCTGCTGCCACCTACAGCTGGTACAAAGACAACAAACCGCTTCACGCTGCCACTCTCCATGAAATCAACTACACCCTGGACCCCAAAACTGGGACTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105122 lncRNA upstream 42487 17158925 ~ 17161310 (+) False G71061
TU105141 lncRNA upstream 43604 17132471 ~ 17160193 (+) False G71061
TU105114 lncRNA upstream 45152 17151440 ~ 17158645 (+) True G71061
TU105116 lncRNA upstream 68406 17132471 ~ 17135391 (+) False G71061
TU105030 lncRNA upstream 319896 16883642 ~ 16883901 (+) True G71008
TU105189 lncRNA downstream 196 17206701 ~ 17292889 (+) True G71083
TU105191 lncRNA downstream 196 17206701 ~ 17208520 (+) False G71083
TU105194 lncRNA downstream 77565 17284070 ~ 17287296 (+) True G71086
XR_006251728.1 lncRNA downstream 85359 17291864 ~ 17292889 (+) True LOC122351293
TU105197 lncRNA downstream 101078 17307583 ~ 17309040 (+) True G71088
XM_043249408.1 mRNA upstream 15709 17178483 ~ 17188088 (+) False tfdp1a
XM_043249409.1 mRNA upstream 15709 17178608 ~ 17188088 (+) True tfdp1a
XM_043249410.1 mRNA upstream 15709 17178608 ~ 17188088 (+) False tfdp1a
XM_043248081.1 mRNA upstream 167109 17027849 ~ 17036688 (+) True shox
XM_043248944.1 mRNA upstream 265523 16919401 ~ 16938274 (+) False si:ch211-269e2.1
XM_043249610.1 mRNA downstream 2477 17208982 ~ 17214468 (+) True LOC122352102
XM_043248254.1 mRNA downstream 81438 17287943 ~ 17291835 (+) True LOC122351291
XM_043248531.1 mRNA downstream 86487 17292992 ~ 17299145 (+) True LOC122351452
XM_043249586.1 mRNA downstream 113425 17319930 ~ 17323175 (+) True si:dkey-192g7.3
XM_043248645.1 mRNA downstream 421813 17628318 ~ 17638227 (+) True sona
TU105078 other upstream 284507 16916761 ~ 16919290 (+) True si:ch211-218d20.15
TU104753 other upstream 454102 16745899 ~ 16749695 (+) False mpc2b
TU104743 other upstream 472436 16728507 ~ 16731361 (+) True G70814
TU104501 other upstream 1457691 15734592 ~ 15746106 (+) False plcl1
TU104429 other upstream 1492620 15708236 ~ 15711177 (+) False LOC122351678
TU105274 other downstream 132622 17339127 ~ 17339622 (+) True G71130
XR_006251816.1 other downstream 529501 17736006 ~ 17949307 (+) False lrp1bb
XR_006251864.1 other downstream 1340655 18547160 ~ 18547282 (+) True LOC122352186
XR_006251866.1 other downstream 1341976 18548481 ~ 18548607 (+) True LOC122352188
TU105623 other downstream 1343773 18550278 ~ 18552882 (+) False clasp1a

Expression Profile