RNA id: TU105275


Basic Information

Item Value
RNA id TU105275
length 411
lncRNA type inter_gene
GC content 0.69
exon number 1
gene id G71131
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 17339120 ~ 17339530 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gatcccagcagcccctgcgctcatcctcagctctccatcacgagctcgccacgggtctgccggtccccatcgccgtcgagggtggacgatccctcgcctcaccgtcccgcctccgagtcccggactcctcctcggctcgtagacccgtcggctccccctgggcttctagctccctcctctccaccgtggtccgtcagtccaccagctccaccaggctccatcgtccctccggctccgccttggtctgtcgtcgaccatccgtcgcctcgggattcctctcctccggcttcgcctcgtccctccatcccaccggctctgtcaggctcctccttccctccggctccacctcagtcctcagtcgctctggctccgcagcgtccttcctgtcccccgtctccgtgtcagtcgccg

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0042110 T cell activation biological_process
GO:0007275 multicellular organism development biological_process
GO:0043383 negative T cell selection biological_process
GO:0030217 T cell differentiation biological_process
GO:0048856 anatomical structure development biological_process
GO:0032502 developmental process biological_process
GO:0045058 T cell selection biological_process

KEGG:

id description
ko04350 TGF-beta signaling pathway
ko04390 Hippo signaling pathway
ko05217 Basal cell carcinoma

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105257 lncRNA downstream 41970 17212876 ~ 17297150 (-) True G71117
TU105081 lncRNA downstream 419806 16917224 ~ 16919314 (-) True G71035
TU105039 lncRNA downstream 449691 16886805 ~ 16889429 (-) False cd247l
TU104975 lncRNA downstream 471598 16866492 ~ 16867522 (-) True G70981
TU105028 lncRNA downstream 472698 16866178 ~ 16866422 (-) True G71006
TU105278 lncRNA upstream 1015 17340545 ~ 17340915 (-) True G71134
XR_006251856.1 lncRNA upstream 4186 17343716 ~ 17351712 (-) True LOC122352115
TU105286 lncRNA upstream 24657 17364187 ~ 17368255 (-) False ncam2
TU105295 lncRNA upstream 252434 17591964 ~ 17592183 (-) True G71149
TU105298 lncRNA upstream 254183 17593713 ~ 17593933 (-) True G71152
XM_043248528.1 mRNA downstream 23302 17299245 ~ 17315818 (-) True appb
XM_043248530.1 mRNA downstream 23305 17299245 ~ 17315815 (-) False appb
XM_043248272.1 mRNA downstream 140729 17196411 ~ 17198391 (-) False si:ch211-160b11.4
XM_043248269.1 mRNA downstream 140730 17196411 ~ 17198390 (-) True si:ch211-160b11.4
XM_043248271.1 mRNA downstream 140788 17196411 ~ 17198332 (-) False si:ch211-160b11.4
XM_043248035.1 mRNA upstream 24663 17364193 ~ 17521559 (-) False ncam2
XM_043248033.1 mRNA upstream 24663 17364193 ~ 17521559 (-) True ncam2
XM_043248036.1 mRNA upstream 33631 17373161 ~ 17521560 (-) False ncam2
XM_043248995.1 mRNA upstream 219998 17559528 ~ 17574374 (-) True zp2l1
XM_043248852.1 mRNA upstream 310445 17649975 ~ 17652121 (-) True dnajc28
TU105258 other downstream 83629 17235872 ~ 17255491 (-) True G71118
TU104984 other downstream 515345 16817140 ~ 16823775 (-) True G70986
TU104983 other downstream 515426 16817140 ~ 16823694 (-) False G70986
TU104521 other downstream 1567256 15771421 ~ 15771864 (-) True G70663
XR_006251733.1 other downstream 1939683 15389849 ~ 15399437 (-) False tmtc4
XR_006251863.1 other upstream 1230225 18569755 ~ 18569882 (-) True LOC122352185
TU106113 other upstream 2380968 19720498 ~ 19721737 (-) False ankar
TU106134 other upstream 2456727 19796257 ~ 19804599 (-) False glsb
XR_006251780.1 other upstream 2542294 19881824 ~ 19893315 (-) False mfsd6b
TU106614 other upstream 3149634 20489164 ~ 20503890 (-) False G71938

Expression Profile