RNA id: XM_043248033.1


Basic Information

Item Value
RNA id XM_043248033.1
length 4285
RNA type mRNA
GC content 0.48
exon number 17
gene id ncam2
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 17364187 ~ 17521560 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGCATTTGAAAGAGTGCTGCATTGAGGCAGCTGCTTCCAGCTCCTCAACAGATCCCGTCTGTGGCAGACAGAGAGCGAGTGAGTGAGTAGCGAGCGAGCTCGTGCGCGCCAGCGACTGACACGCGCGGAGAGGGAGAACCAGCGTCCAGCGTCCGTTCAACTCACTTCGAGCACTGGCCGCTGTCCACCAGGACCTGCTCAAAATGATCCGGACCGTCCTCTGTTTCCTCGGATTGCTCGTCGGTGGCAGTCAAGGTGTCCTCCAGGTGTCAATCTCGCTAAAAAAGGTGGAGCTGAGCGTTGGAGAGTCCAAGTTTTTCACATGCACAGtgatCGGGGAGCCTGTGAATCTGGACTGGTATAACCCGCAGGGGGAGCGGATGGTCCCGTCTCAGCGGGTGGCCCTGCACAATGAAGGTGTTCGTTCCAGACTCACCCTCTATAATGCCAAAATAGAAGATGCTGGCATCTACCGGTGCCAGGCCAGCGACGCACAGGGACATACACAGGAGGCCACTGTGGTGCTGGAAATCTACCAGAAGCTGACGTTCAGAGATGTGAGGTCTCCTCAGGAGTTTCGACAGGGCGACGTGGCTGAAGTGGTCTGTGACGTCACCAGCTCCCCCGTTCCTGTGGTCTCCTGGTTTTACAACAATGTAGAGATCATCGAAGACACTGAGAAGTTTCAACTCctacaaaacaacaatttgCAAGTCCAGAGAGTAACTAAAGCGGACGAAGGAGTGTACCGCTGCGAGGCCAGAGTCGAGGCCAGGGGGGAGATCGACTTCCGGGACATCATCCTGGTGGTTAACGtTCCACCGGTCATCTCTGTGCCGCAGCAGTCCTTTAATGCCACTGCGGAGTATGGAGAATCTGTGACCTTCACCTGCCGGGCCTACGGCTCACCTGAACCTGATGTTACCTGGCACAGGAAGGGAGTGCACCTCCAGGAATCGGAGCGGTATGTAATGAGAGCTCGAGGTACGACGCTCACCGTTCGAAACATTCAACAGGACGACGGGGGCTCCTACACCTGCAAAGCCTCTAACAAGGCGGGAGAAGTTGAGCACGAACTGTTTCTCAAGGTTTTTGTTCAGCCACACATTACTAAGCTAAGGAATGTGACAGCTGTGGAAGGCAGCGCTGCTATGATCTCCTGCAAGGCTGAAGGTGAACCTTTGCCGGAAATCTCCTGGAGGCGAGCAAGTGATGGACACAGCTTTTCAGATGGAGATAAGaGTTCAGATGGCCGTGTGGAGGTGCGAGGCCGTTATGGTGAATCCATGCTGACTATTGTTGGAGTCAAGCTATCCGACTGGGGGCGCTTTGACTGTGAGGCTCTCAGCAGGATCGGTGGACATCAGAAGAGCATGTTCTTGGATATTGAGTATGCACCAAAGTTTCAGGCCAACCACACTATATTTTTCTCGTGGGAAGGGAACCCGGTGAACATTAGCTGTGATGTTATGTCTAACCCTCCGGCCACAATGCTGTGGAGACGGGAAAAGTTGACCATCCCTAGCGAGGGTGCTGGAAACATGCGTGTATACAGTGCCCCTGGCAGATCACTCCTCGAGGTTACCCCGATGTCAGACAGAGATTTTGGCCGTTACAACTGTACAGCCAGAAACAACATTGGAATGCGTTTTCAGGAGTTCATCCTAGCACAGGCAGATGTTCCCTCAAACCCTTACTCTGTTCGGCTGAGCTCTGTGGCACAGCGCGTGGCCACAGTTACCTTCACGAAACCAGACTCTCATGGCGGCGTACCCATCAGTTACTACCTGGTCAAATACAAAGACATCAGCTCACAGGACTGGAAGGATGTGAAATCACAGGGGACGCAGACAGTCGTGTTGCTCACTAACCTTGAGCCCAACACAACCTATGAGGTGAGAGTAGCCGCGGTGAACGGAAAAGGTCAAGGAGAGTTCAGCCGCATAGAAAGCTTTCAAACTCTGCCCATACGAGAGCCAAGTCCCCCTTCAGTTCAGGGTCAACGAGGGGTGGGTAAGGCGTACAGACTTGGTCTAGTCAAGCAGGATGATGGAGGAATGCCCATCCTGGAGTATATcatcaaatacaaaacaGATAAAGAAGAGCAGTGGATGACAAAACTGGTTCCAGGTGTGAATGATTTCGTGTTGCTGCAACCGCTCCAGTGGAATACACAGTATGAGGTGGAAATCACTGCACGTAACGTCAAAGGCCTGTCTGAACCCACCTTCGTGAAGTTCTCCATGCCTCAGAAACCTGATATCACAGCAGATTCGCTGTTCAGCGGCCTAGGCCTGGGCGCAGTGGTTGGGCTGGGGTTAGCTGGCCTACTGCTGCTGCTCGTGCTAGTGGACGTCAGCTGCTTCTTCCTGCGCCAGTGCGGCCTGCTCATGTGCATCACCCGCAAGCTCTGCAGCAAAAAGACAGCTACTAGCGGCAAGAGCAAAGAGCTAGAGGAGGGCAAAGCTGCCTACCTGAAATTGCCACTAAAAGAGGAAAACGGTAAGGAGACGCTGAAACCAGACACGATCGAAATCAAAGTTCACGGTGACAACAGCCTACACATGACACAGGAGGACAGTAAAGCATAATGGAGGCCCTGCTATCCTCTAAAAGAACATGCAAAGTGAGCCACCCGGAGACCAACAGCAAGCAAACTAATGAGAATACAAGCAAGAACACGCCAACCAATTGTAAGATCTTTTGTTAGAGACTCGTCGTCGGGGTATCAGAAGAGGCCACGCGATAACTgctttgtgaaacatttttcGGAGGTTGCCGCTCAACAAACAGGCTCCTGTTTATTTGTGCTTGTTCTTGCTTGTTTTGGGCCTTTTTTGGGAGggggttgtttttttgtttttgttttttcaaggcTTTGCTGTTGCTTTGAGTCTGATTCTTTGTTACTTGAAAAGGTGGGTTTACCCCGTAAGCTTCATgttttctcttgctctctcatCCTCTCTTTCTTTGGGATCCGGCTGTTGCACCTTTCCAGTGTGGTTGCTCAAACATTGCTTTTTAATGCGGTACGCGTGGAAATCCCCCACCTCTCTTTGCGGTCCGTGTTGTAGTTTTGGGTCACTGTTTGGGTAACGTGTTTATTTTCTAGCCTTTTTCCCACTATATGTCTCGCCCAAATGCAAAGAAATTACAGAATGCTCAGTATTAAAGCGAGGATCAACCACACTTGACCTCAAACTGAGTAAATGGTACATGGTTGGTCCCGGTATTGAGCGCTGATACATGCCCAACTCTTCGGCTTGAACGATGAATTTCTCATAGATTACAAGTGTTTTTGTGGATGAAAATATGTCCTCGTTTTAAACGCTATTGTTTCAGAGTCAAAGGAGCATAGTATGAGTCATACTTTCATGTCAAGATATTtcggaaacaaaaaaaaagagtgcattTCCTTTAGAAGCGTGTGAAAGTTTGTAAGTGGGTGCATCTGAGCATGGACGTGTTGTCTTTGGGGTGTTTGGATGCGTGTACTAGCGAGCATGGAGTGTAGAAAGAGAGGGACATGTAAAGAAAGTAGAGGTTGCCGAGTTTTACGTGAATATAAggaaaacattataaatacctATTCAAGTACATCAATGTAAATATACTTGTATTTCTTTGGAATGtttcaaaagcagaaaaaaatatgattcattCCAGGTTCTGTCTTAGTGTCGCACATGACTGATTATGAATTATGTTTATCGAAATTGGCTGTCTCTCAAAAATGATACCGTGTCCAACAGACTGAAAGATCTCAAGAGGCAAAGAAGGACAGATGCCCTGGAAACTGGGTACAGATGCATCACAGAGGTATCGCTATAAAATGAGCTTTTTGGAAATCAAATCCATGCCATTTATGGATCTTTTAAAAGACGACGCTTTGGTTGTATGAGAGAGGAGGGGTTTGCCGGTGAACAAGATCTTAGTGTTGCAATAACATGGATGGGAATGGCATACTGCTTAGACGCATGCTCATTTTACCAGTCAAGAGTTTCAGGATTAAGATCCATGAGGTCTTGAGATCCATGTTCATGTTCACTTTAGTTTGGGCCAACAAATTTAtcccaaaaaaagttttttgcattatttcagcATTGTGTTTCATATACACCTGGCTCTCCACATTCAGCGCAATAGAACATTGTGGAATGTTGCCCATTTCTTTTCAGCAATCTAAAGGGAGCACTCCATAAGCCCAACTGTACTTGTGGAATTCTTGTAATCCAGTGTAATTTTTCTTCTGTAAATAAAAGTGTCccaatataaaagtta

Function

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K06491 NCAM, CD56; neural cell adhesion molecule

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251856.1 lncRNA downstream 12481 17343716 ~ 17351712 (-) True LOC122352115
TU105278 lncRNA downstream 23278 17340545 ~ 17340915 (-) True G71134
TU105275 lncRNA downstream 24663 17339120 ~ 17339530 (-) True G71131
TU105257 lncRNA downstream 67043 17212876 ~ 17297150 (-) True G71117
TU105081 lncRNA downstream 444879 16917224 ~ 16919314 (-) True G71035
TU105295 lncRNA upstream 70405 17591964 ~ 17592183 (-) True G71149
TU105298 lncRNA upstream 72154 17593713 ~ 17593933 (-) True G71152
TU105306 lncRNA upstream 81806 17603365 ~ 17603623 (-) True G71160
XR_006251765.1 lncRNA upstream 85982 17607541 ~ 17629953 (-) True LOC122351532
TU105331 lncRNA upstream 86372 17607931 ~ 17608190 (-) False LOC122351532
XM_043248528.1 mRNA downstream 48375 17299245 ~ 17315818 (-) True appb
XM_043248530.1 mRNA downstream 48378 17299245 ~ 17315815 (-) False appb
XM_043248271.1 mRNA downstream 165861 17196411 ~ 17198332 (-) False si:ch211-160b11.4
XM_043248995.1 mRNA upstream 37969 17559528 ~ 17574374 (-) True zp2l1
XM_043248852.1 mRNA upstream 128416 17649975 ~ 17652121 (-) True dnajc28
XM_043249540.1 mRNA upstream 506795 18028354 ~ 18038668 (-) True ralba
XM_043249405.1 mRNA upstream 675567 18197126 ~ 18205461 (-) True hspbap1
XM_043248996.1 mRNA upstream 729677 18251236 ~ 18366267 (-) True sema5ba
TU105258 other downstream 108702 17235872 ~ 17255491 (-) True G71118
TU104984 other downstream 540418 16817140 ~ 16823775 (-) True G70986
TU104983 other downstream 540499 16817140 ~ 16823694 (-) False G70986
TU104521 other downstream 1592329 15771421 ~ 15771864 (-) True G70663
XR_006251733.1 other downstream 1964756 15389849 ~ 15399437 (-) False tmtc4
XR_006251863.1 other upstream 1048196 18569755 ~ 18569882 (-) True LOC122352185
TU106113 other upstream 2198939 19720498 ~ 19721737 (-) False ankar
TU106134 other upstream 2274698 19796257 ~ 19804599 (-) False glsb
XR_006251780.1 other upstream 2360265 19881824 ~ 19893315 (-) False mfsd6b
TU106614 other upstream 2967605 20489164 ~ 20503890 (-) False G71938

Expression Profile