RNA id: TU105306



Basic Information


Item Value
RNA id TU105306
length 259
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G71160
representative True

Chromosome Information


Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 17603365 ~ 17603623 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TAGCAAATTCTGGTCAAAGAGCAAACCGCACAAAAGATCACCAGGCGAGTGTGGTGAATAAAGAGTAAGAAGGAGTGAATGAACATTgggaaaggagagagagagagcgagagaaagggAACAACAAAGATTAGATCAGGTGTTTTACTGTGCAGGAGAGTCTGCTCTCAGGCTTCATTATGCTAGGAGCTGTAAATCCATTGGGGGAGTTAATTCAATTTGAAGCACCATATAAAAGCATCATTTACTGCAGCTTCGC

Function


GO: NA

KEGG:

id description
ko03060 Protein export
ko03070 Bacterial secretion system
ko02024 Quorum sensing

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU105298 lncRNA downstream 9432 17593713 ~ 17593933 (-) True G71152
TU105295 lncRNA downstream 11182 17591964 ~ 17592183 (-) True G71149
TU105286 lncRNA downstream 235110 17364187 ~ 17368255 (-) False ncam2
XR_006251856.1 lncRNA downstream 251653 17343716 ~ 17351712 (-) True LOC122352115
TU105278 lncRNA downstream 262450 17340545 ~ 17340915 (-) True G71134
XR_006251765.1 lncRNA upstream 3918 17607541 ~ 17629953 (-) True LOC122351532
TU105331 lncRNA upstream 4308 17607931 ~ 17608190 (-) False LOC122351532
TU105332 lncRNA upstream 23911 17627534 ~ 17629009 (-) False LOC122351532
TU105340 lncRNA upstream 32772 17636395 ~ 17638217 (-) True G71181
TU105345 lncRNA upstream 34904 17638527 ~ 17639046 (-) False G71183
XM_043248995.1 mRNA downstream 28991 17559528 ~ 17574374 (-) True zp2l1
XM_043248036.1 mRNA downstream 81805 17373161 ~ 17521560 (-) False ncam2
XM_043248035.1 mRNA downstream 81806 17364193 ~ 17521559 (-) False ncam2
XM_043248033.1 mRNA downstream 81806 17364193 ~ 17521559 (-) True ncam2
XM_043248530.1 mRNA downstream 287550 17299245 ~ 17315815 (-) False appb
XM_043248852.1 mRNA upstream 46352 17649975 ~ 17652121 (-) True dnajc28
XM_043249540.1 mRNA upstream 424731 18028354 ~ 18038668 (-) True ralba
XM_043249405.1 mRNA upstream 593503 18197126 ~ 18205461 (-) True hspbap1
XM_043248996.1 mRNA upstream 647613 18251236 ~ 18366267 (-) True sema5ba
XM_043249266.1 mRNA upstream 823449 18427072 ~ 18492873 (-) True adcy5
TU105258 other downstream 347874 17235872 ~ 17255491 (-) True G71118
TU104984 other downstream 779590 16817140 ~ 16823775 (-) True G70986
TU104983 other downstream 779671 16817140 ~ 16823694 (-) False G70986
TU104521 other downstream 1831501 15771421 ~ 15771864 (-) True G70663
XR_006251733.1 other downstream 2203928 15389849 ~ 15399437 (-) False tmtc4
XR_006251863.1 other upstream 966132 18569755 ~ 18569882 (-) True LOC122352185
TU106113 other upstream 2116875 19720498 ~ 19721737 (-) False ankar
TU106134 other upstream 2192634 19796257 ~ 19804599 (-) False glsb
XR_006251780.1 other upstream 2278201 19881824 ~ 19893315 (-) False mfsd6b
TU106614 other upstream 2885541 20489164 ~ 20503890 (-) False G71938

Expression Profile