RNA id: TU105343



Basic Information


Item Value
RNA id TU105343
length 424
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G71183
representative False

Chromosome Information


Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 17638527 ~ 17639686 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TTAAAGGGTTTTCAATGGCAAAAACATCCACGGGAACTTTCCAGGCCACCAGTGAATCGGTCAGGTCGGTAAAATGCACGTCCACGGTGGCCTCACCGTCCTCGTTATTCGACTGCTGCATAACGTAAATATGGGAACATATGGGAGACTACTGCCCAAGTCGTAAAACAAGTTTAGCTCTTAGAGAAGCTGTGATAATCATATGTCGTGACAGGCTAAGCTATCTGTCTATTCTGTATGGAAATGTCACTGCCCTTAAACGACTCACGCTCACTTTGGGAGCCGATTTGTATATCGGCATTGACGTGTTAAATTGGTTTTAACTTTACACTAGATGCTTGTCTTTTAAGATGGGTGTTATAATAACAAGTAACGATTCAACCCTTCGTTTACGGAAAGCAAAAATCGATTCACGCAGCTCGAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU105340 lncRNA downstream 406 17636395 ~ 17638217 (-) True G71181
XR_006251765.1 lncRNA downstream 8670 17607541 ~ 17629953 (-) True LOC122351532
TU105332 lncRNA downstream 9614 17627534 ~ 17629009 (-) False LOC122351532
TU105331 lncRNA downstream 30433 17607931 ~ 17608190 (-) False LOC122351532
TU105306 lncRNA downstream 35000 17603365 ~ 17603623 (-) True G71160
TU105346 lncRNA upstream 1133 17640179 ~ 17640403 (-) True G71184
TU105347 lncRNA upstream 2008 17641054 ~ 17641287 (-) True G71185
TU105348 lncRNA upstream 3157 17642203 ~ 17642438 (-) True G71186
TU105349 lncRNA upstream 4310 17643356 ~ 17643676 (-) True G71187
TU105330 lncRNA upstream 5392 17644438 ~ 17645920 (-) True G71175
XM_043248995.1 mRNA downstream 64249 17559528 ~ 17574374 (-) True zp2l1
XM_043248036.1 mRNA downstream 117063 17373161 ~ 17521560 (-) False ncam2
XM_043248035.1 mRNA downstream 117064 17364193 ~ 17521559 (-) False ncam2
XM_043248033.1 mRNA downstream 117064 17364193 ~ 17521559 (-) True ncam2
XM_043248530.1 mRNA downstream 322808 17299245 ~ 17315815 (-) False appb
XM_043248852.1 mRNA upstream 10929 17649975 ~ 17652121 (-) True dnajc28
XM_043249540.1 mRNA upstream 389308 18028354 ~ 18038668 (-) True ralba
XM_043249405.1 mRNA upstream 558080 18197126 ~ 18205461 (-) True hspbap1
XM_043248996.1 mRNA upstream 612190 18251236 ~ 18366267 (-) True sema5ba
XM_043249266.1 mRNA upstream 788026 18427072 ~ 18492873 (-) True adcy5
TU105258 other downstream 383132 17235872 ~ 17255491 (-) True G71118
TU104984 other downstream 814848 16817140 ~ 16823775 (-) True G70986
TU104983 other downstream 814929 16817140 ~ 16823694 (-) False G70986
TU104521 other downstream 1866759 15771421 ~ 15771864 (-) True G70663
XR_006251733.1 other downstream 2239186 15389849 ~ 15399437 (-) False tmtc4
XR_006251863.1 other upstream 930709 18569755 ~ 18569882 (-) True LOC122352185
TU106113 other upstream 2081452 19720498 ~ 19721737 (-) False ankar
TU106134 other upstream 2157211 19796257 ~ 19804599 (-) False glsb
XR_006251780.1 other upstream 2242778 19881824 ~ 19893315 (-) False mfsd6b
TU106614 other upstream 2850118 20489164 ~ 20503890 (-) False G71938

Expression Profile