RNA id: TU105349



Basic Information


Item Value
RNA id TU105349
length 321
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G71187
representative True

Chromosome Information


Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 17643356 ~ 17643676 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CTTTATTTGTGAGGCATTTACAAGCTTGGTAACACTATTAAACAGACATTCTTGACCCAAGAAATAGGTCACGGGTCTGTAGGGTTGTGGCCAGCAGAGGGAAGAATAATGATAAaggcaaataataaaaataagcaatgtaataaaatgcaaataaaaacaaaagcagaatcTGCCGGTCGAAGCGCGACCATTTAATGATAAGAGTATAGCAAAACAATGAAGATACAGgctaaactgtgaaaaaaatgaacacaggttttattttttttaaatcaattattaattttattcagcaagggtgTATTTAATTGCTCAAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU105348 lncRNA downstream 918 17642203 ~ 17642438 (-) True G71186
TU105347 lncRNA downstream 2069 17641054 ~ 17641287 (-) True G71185
TU105346 lncRNA downstream 2953 17640179 ~ 17640403 (-) True G71184
TU105344 lncRNA downstream 3670 17638623 ~ 17639686 (-) True G71183
TU105345 lncRNA downstream 4310 17638527 ~ 17639046 (-) False G71183
TU105330 lncRNA upstream 762 17644438 ~ 17645920 (-) True G71175
TU105352 lncRNA upstream 17540 17661216 ~ 17661445 (-) True G71190
TU105360 lncRNA upstream 21843 17665519 ~ 17692820 (-) True G71194
XR_006251849.1 lncRNA upstream 89527 17733203 ~ 17735919 (-) False LOC122352098
XR_006251848.1 lncRNA upstream 89527 17733203 ~ 17735919 (-) True LOC122352098
XM_043248995.1 mRNA downstream 68982 17559528 ~ 17574374 (-) True zp2l1
XM_043248036.1 mRNA downstream 121796 17373161 ~ 17521560 (-) False ncam2
XM_043248035.1 mRNA downstream 121797 17364193 ~ 17521559 (-) False ncam2
XM_043248033.1 mRNA downstream 121797 17364193 ~ 17521559 (-) True ncam2
XM_043248530.1 mRNA downstream 327541 17299245 ~ 17315815 (-) False appb
XM_043248852.1 mRNA upstream 6299 17649975 ~ 17652121 (-) True dnajc28
XM_043249540.1 mRNA upstream 384678 18028354 ~ 18038668 (-) True ralba
XM_043249405.1 mRNA upstream 553450 18197126 ~ 18205461 (-) True hspbap1
XM_043248996.1 mRNA upstream 607560 18251236 ~ 18366267 (-) True sema5ba
XM_043249266.1 mRNA upstream 783396 18427072 ~ 18492873 (-) True adcy5
TU105258 other downstream 387865 17235872 ~ 17255491 (-) True G71118
TU104984 other downstream 819581 16817140 ~ 16823775 (-) True G70986
TU104983 other downstream 819662 16817140 ~ 16823694 (-) False G70986
TU104521 other downstream 1871492 15771421 ~ 15771864 (-) True G70663
XR_006251733.1 other downstream 2243919 15389849 ~ 15399437 (-) False tmtc4
XR_006251863.1 other upstream 926079 18569755 ~ 18569882 (-) True LOC122352185
TU106113 other upstream 2076822 19720498 ~ 19721737 (-) False ankar
TU106134 other upstream 2152581 19796257 ~ 19804599 (-) False glsb
XR_006251780.1 other upstream 2238148 19881824 ~ 19893315 (-) False mfsd6b
TU106614 other upstream 2845488 20489164 ~ 20503890 (-) False G71938

Expression Profile