RNA id: TU105574



Basic Information


Item Value
RNA id TU105574
length 225
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G71334
representative True

Chromosome Information


Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 18543774 ~ 18543998 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CAAACCTTACCTTTTCTCCATAGAAGAGAGGTCAAATCCCAGAGCAACGGCCAGATCTGAACCTAAAAGATAGAGTTCATGATCCAAATAGTTATGTGTTGCAGCAGTCACGTTAGTTTATGCATACTCTAGAGCTAAGGTGAAGAATACCTAACAGCTCACTGTTACAGTCTGCAGCAACCACTTCCAGTTTATAGCAGGAGTGTGGACTATTGTGGGCCAGTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU105573 lncRNA upstream 2438 18540883 ~ 18541336 (+) True G71333
TU105571 lncRNA upstream 5074 18538480 ~ 18538700 (+) True G71331
TU105387 lncRNA upstream 513226 18028361 ~ 18030548 (+) True G71221
TU105314 lncRNA upstream 901336 17641910 ~ 17642438 (+) True G71167
TU105308 lncRNA upstream 935944 17607512 ~ 17607830 (+) True G71162
TU105770 lncRNA downstream 203913 18747911 ~ 18892052 (+) True G71442
TU105772 lncRNA downstream 273140 18817138 ~ 18892052 (+) False G71442
XR_006251757.1 lncRNA downstream 345925 18889923 ~ 18893969 (+) True LOC122351431
TU105801 lncRNA downstream 349553 18893551 ~ 18893849 (+) False LOC122351431
TU105813 lncRNA downstream 436315 18980313 ~ 18985811 (+) True G71457
XM_043249580.1 mRNA upstream 6723 18518212 ~ 18537051 (+) True cacnb4a
XM_043249187.1 mRNA upstream 33748 18500302 ~ 18510026 (+) True stam2
XM_043249667.1 mRNA upstream 118706 18416183 ~ 18425068 (+) True sec22a
XM_043249360.1 mRNA upstream 131133 18368743 ~ 18412641 (+) True pdia5
XM_043248059.1 mRNA downstream 2238 18546236 ~ 18549389 (+) True nifk
XM_043249613.1 mRNA downstream 5938 18549936 ~ 18610928 (+) False clasp1a
XM_043249620.1 mRNA downstream 5938 18549936 ~ 18610928 (+) False clasp1a
XM_043249625.1 mRNA downstream 5939 18549937 ~ 18610928 (+) False clasp1a
XM_043249623.1 mRNA downstream 5939 18549937 ~ 18610928 (+) False clasp1a
XR_006251816.1 other upstream 594467 17736006 ~ 17949307 (+) False lrp1bb
TU105274 other upstream 1204152 17339127 ~ 17339622 (+) True G71130
TU105185 other upstream 1337269 17203797 ~ 17206505 (+) False jam2b
TU105078 other upstream 1624484 16916761 ~ 16919290 (+) True si:ch211-218d20.15
TU104753 other upstream 1794079 16745899 ~ 16749695 (+) False mpc2b
XR_006251864.1 other downstream 3162 18547160 ~ 18547282 (+) True LOC122352186
XR_006251866.1 other downstream 4483 18548481 ~ 18548607 (+) True LOC122352188
TU105623 other downstream 6280 18550278 ~ 18552882 (+) False clasp1a
XR_006251851.1 other downstream 67997 18611995 ~ 18619387 (+) False tfcp2l1
XR_006251852.1 other downstream 67998 18611996 ~ 18619387 (+) False tfcp2l1

Expression Profile