RNA id: XM_043249623.1


Basic Information

Item Value
RNA id XM_043249623.1
length 7324
RNA type mRNA
GC content 0.48
exon number 43
gene id clasp1a
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 18549936 ~ 18610928 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAGGAAAAATGACCATGTGGCAGCGGGACAGAGGAAAACCAGAGCATTTCTAATATGCGGCTGTAAACAAAATATCTGTACGCTATTGTGTGGAAAATCATTCCAAATATCAGAGCAAATATTGGCAATTACAAAGCAGGGAGGACCTCCGAATTATGAAGCAATGCTCCGCCAGaccctctctctcctgctctaGTTACCACAACTCCTGCTGCTCCACCGCAACCAAGAGCGCTTCTGCCGCTGCTAGTGGTTTGGCTGCCTCCTAAAGGGACAAAAAGGAGAGTTTGCAGTCCTCATCAGCTGTTGTCTAGTCACATATGGTGCATCGTTTGCATTCCCGAGTCGACATCCCTACCGCTCAGCTTCTTGCCAGCCTGTGGCACTCATAGTGTTCATCAACACAGGATATTAATAAGCGTGTGCTCTTATTTTGCCTGGATAGCACACGCTAAAGacctatttttttcccttttttcctcTCCACTGCCACACGGGTGGTGGCAGGACATCATAGACCATGGAGCCCAATATGGAGTACTGTCTGACCCAGGTTCTACAGAAGGATGTGGCCCGCAGGTTGCAGATGGGTCCGGAGCTCATCGACTACATCACAGATGCTGACAAGTGTCACGACCTGGAGAGTGACCAGACTGCGCTGGATAAAATGGTGGACGGTATCGCCACCTCTTGGGTTAACTCCAGCAACTTCAAGctgGCTTTGTTAGGAATGGACCTTCTATCTGCCTTAGTGACGAGATTACAGGACCGATTTCGTCATCAAGTTGGTACAGTTTTGCCCAGCTTGATAGATCGCTTAGGCGACGCCAAAGATCAAGTCAGAGACCAAGATCAAATCCTGCTGCTGAAGATCATGGAGCAAGCAGCTACTCCTCAGTACATATGGGACCGAATGTTGGGGGGgttcaaacacaaaaacaaccgGACCAGAGAGggagtgtgtctctgtctcatCTCAACTCTGAACACATACGGTGCCCAAGGCTTAACCCTGAGCAAAATTGTACCACATATATGTAATCTACTCGGAGACCCCACAAGTCAGGTTCGGGATGCGGCCATGAACTGCCTTGTGGAAATATACAGACATGTTGGAGAGAAGGTTAGGATTGACCTTAGCAAAAAAGGACTGCCGCAATCAAGgttgaATGTAATTTTCAGCAGATTTGATGAAGTCCAAAGATCTGGGAACATGATCCTCTCCTCAGGTTCAGATAAGAACTTTGATGACGAGGACTCTGTGGATGGGGGCaggtcctcctcctcttcctcttctaaGGGCTTCTCCAACAGCAGGAGAGGGGGCAGCATGGGCTCAATGAGACGACCCAGTTCTGCCTCTGGATCCAGGGCTCCAGGGAAGGATGGTGTCAGTGCAGGAGCTGTGGATGAAGAGGATTTTATCAAGGCTTTTGAAGATGTACCTGCAGTTCAGatataTTCAAGTAAGGAGTTGGAGGACTCTTTGAATAAGATCCGTGAAGTTCTGTCAGATGACAAGCAAGACTGGGAACACCGTGTCACTGCTCTGAAGAAAGTGCGGTCCCTGCTTCTGGCTGGAGCAACCGAACACGAGGGTTTCCTTCAACACCTACGGCTTTTAGAAGGTGCCTTCAAGCTGTCAGCTAAAGATCTTCGGTCTCAAGTGGTTCGAGAGGCCTGTATCACATTAGGGCATCTGTCTTCATTGCTGGGGAATAAATTTGATCATGGGGCTGAAAGCATCATGCCTACGCTGCTCAACTTGGTGCCCAACAGCGCCAAAGTTATGGCCACGTCTGGAGTGGCGGCCATCCGCCTCATCTTGCGACATACACACTTCCCACGCCTTATCCCGATCATCACCAGCAACTGCACTTCTAAATCTGTGGCTGTTCGAAGACGGTGTTATGAGTTTTTAGACCTGTTATTGCAAGAATGGCAGACACACACTCTAGAGAGGCATGTGGCGGTTCTCACTGAGACCATCAAGAAGGGGATCCATGACGCTGACTCAGAGGCCAGATCTGTGGCCAGAAAgtgCTACTGGGGTTTCCACGGCCATTACAGTCGAGAGGCAGAACACCTGTTTCAGGCATTGGAATCGACCTATCAGAAGGCCTTGCAGTCTCACCTGAAGAGTTCTGACAGTATAGTGTCTCTACCGCAGTCTGACCGCTCCTCCTCAAGCTCGCAGGAGAGCCTCAATCGTCCTCTGTCAGTGAAGAGTGTCGTAGGAGGACCTGTTACAAGAAGTAAAGTGATCGGCTCTAGGGTGTCCTCCACCCCTGGTGCCCTCCAGCGCTCCCGCAGTGACATAGACGTGAACGCCGCCTCCAGTGCCAAATCTCGCATGTCCACCACAACTTCCCCATCTCCCTTCAGCTCCGCTGCAGCTCTGCCTCCAGGCTCCTACGCCTCCCTGGACGGTGCGCCTGGTAAAATAGATGGTCGTGTGCGGACGAGAAGGCAGAGCTCAGGGAGTGCGGTCAGCGCAAACAGCACTGTTACAGACAGTCGTGGTCGAAGCAGAGCTAAAGTGGTCTCTCAGTCCCAGCCCGGCAGTCGATCCAGTTCTCCAGGGAAGCTCTTGGGACATGCATATGGCAGAATTCCAAGAGCCACTGCCCCAACAACTCCCTCAGACAAGTACTCGAGGATCCCAAGAAGCCAGGGATGCAGCCGTGAGACAAGCCCCAGCAGACTGGGCATAGCCAGGCTGTGTGGTAAAGCTCTTCTTCCTGCCACTTCTTCCTATCGCACGCTAGCCCGGAGCAGTCGCATCCCCCGCCCCAGCATGAGTCAGGGGTGCAGCCGTGACACCAGTCGCGAGAGCAGCCGCGACACAAGCCCTGCTCGGGGCTTCACTCCTCTTGCCTCCCGACGTCACTCTCGCTCCACCAGCGCGCTGTCCACGGCCGAACCCGTGGGCCAGTCAGATCGTTTTGGCTTGATCCATCAGGCTCGCATTTCTGCATCTGTCAATGCTATGAGAGTGCTGAACACTGGCACAGAAGTGGAAGCTGCTGTGGCTGATGCTTTGCTGTTAGGAGACTCCAGGAATAAGCGCAAGCCTTTGAGAAGGAGGTACGAGTCTGATGATGATGCAAACAGCGACGCATCCAGTGCCTGCTCAGAGCGTTCATATAGTTCCCGTAACGGAGGCATTCCTCACTACCTGCGTCAGACAGAGGACGTCGCTGAAGTGCTAAACCACTGCGCCAGTTCCAACTGGTCAGAGAGGAAGGAGGGCCTGCTGGGTCTGCAGAACCTGCTGAAGAGCCAGCGCATTCTCAGCCGTGTGGAGCTCAAGAGGCTATGTGAGATCTTCACCAGGATGTTTGCAGATCCTCACAGCAAGAGAGTGTTTAGCATGTTCTTAGAGACTCTAGTAGATTTCATCACCGTGCACAGAGAGGACCTCCAGGACTGGCTTTTTGTACTACTTACTCAGCTGCTGAAGAAAATGGGAGCTGACCTCTTGGGCTCAGTCCAAGCTAAGGTCCAAAAGGCTCTGGATGTCACAAGGGAGTCTTTCCCCTTTGACCAGCAGTTTAACATTCTAATGAGATTCATTGTTGATCAGACTCAAACCCCCAATCTGAAGGTTAAGGTGGCTATCTTGAAATACATTGAGTCCCTGGCACGGCAGATGGACCCTGCAGATTTTGTGAACTCAAGTGAGACCAGATTAGCCGTGTCTCGCATTATCACCTGGACCACAGAACCCAAGAGCTCTGATGTTAGAAAAGCCGCCCAGGTGGTGCTGATCTCACTCTTTGAGCTGAACACCCCCGAGTTCACCATGCTGCTGGGCGCTCTGCCTAAAACATTCCAGGATGGAGCCACCAAGCTTCTGCATAACCATCTGAAGAACTCAAGCAACACCAGCAGTGTGAGTTCACCAAGCAATACAATGGGCCGCACGCCACCCCGGCACCCCACCAGCAGGACTAGTCCTCTCACCTCGCCCACAAATTGTTCCCACGGGGGTCTGTCACCCAGTCGGTTATGGGGTTGGAGTGTCGATGGGCTCTTAAAGCACCCTtctccctctcctcctcctcctactCCTCCGTCTCACTCCTCTATTCCTGCCGGCCCCTCCCTCAGGGCCTTCCGCTGCGCGCTCTCACCAAGTATGCTGGAGTATGACACAGAAAACATGAATTCTGATGAGATCTTTAGCTCGCTGCGTGGTGTCACTGAAGCCATCCAGAGCTTCAGTTACCGCAGCCAAGAGGACCTGAATGAGCCAATCAGACGCGATGGGAAGAAGGATGATGCTGCTGGGAAGGAAGGGGCATCTCCGGGGTCTGATGTAAGACTGGGATTGGACGTAATGGAAGGGGGTCGTACTGCATTGGATAATAAGACGTCTTTACTTAACACACCGTCCCCACGGTCTTTCGCCGTGCCGCGGTCAAGAGAGTTCGCACCCTACGGATATGGAGACACGATCACAGCTTATGACAAAAGTGCCCTGAAGGAGGCCGTTTTTGATGATGACGTGGAGCAGTTCAGAGACTGCCGTCGGCAAGACTGTGGTGAGAACAAGATGGTGCTCCACAAGGGCTTTACTCCTGATCTGGTGGCAGACCTGCTGAAGGAGCTGTCTAATCACAACGAGCGAGTGGAGGAGAGGAAGGGGGCTTTGATCGAGCTCTTGAAGATTGCTCGTGAGGACAGCCTGGCTGTGTGGGACGAACACTTCAAAACAATCCTATTGCTGCTATTGGAGACACTCGGGGACAAGGATCACACTATCCGAGCTCTGGCTTTACGGGTTCTGAAGGAGATTCTGAGGAACCAGCCGGCCCGCTTCAAGAACTATGCAGAACTCACAATCATGAAAACACTAGAAGCCCATAAGGACTCTCATAAAGAGGTGGTTCGGGCAGCTGAAGAGGCTGCCTCTACGTTGGCTGGGTCCATACACCCAGAGCAGTGCATCAAAGTGCTGTGTCCCATCGTGCAGACCGCAGATTATCCCATCAACCTGGCTGCTATTAAGATGCAGACCAAAGTGGTTGAGCGCATTGCAAGGGAGTCACTGCATCAGTTGCTGCCAGACATCATCCCTGGCCTTCTACAAggCTATGATAACACAGAGAGTAGTGTTCGCAAGGCCAGTGTGTTCTGTCTGGTGGCCATCTACTCTGTGATTGGTGAGGAGCTGAAGCCACACTTGGCCCAGCTCACGGGTAGCAAGATGAAGTTGCTAAATCTGTACATTAAGAGGGCCCAGACCAccaacagcaacagcagcagttCTTCAGACGTGTCTTCTCACAGCTAGCCGGATGTGCTCTAATCAGTGCCCTACGCGTGCATTTGGGAAAATAGTTGTGCCTCCTCCagacatcctttttttttttttattattattatcgcttCATCACAGTCTTGCTGGATTTTCCCAGAGAGATGTGTTGCTCACTGCAAtcagacatttttgttttcgtCCAACTCCTGAAAGCCTCTTAGTTAATGTCTCATGCATCTTTCCATCTGTGGAACATTGAATGTAAAGGGGTTCGGATCGAGAAACTTGCATGCTGGCtttttgatagggaacagatCTTCCATGATTGGCATAGCTTTCCTTAATTGGAGCGAACAGGCTATCTTCATCTCCCGAAGAGGTGATTCGTTAACtacatttattagtaataactTATTCATGTTTGCAAGTGGTGTTAAAGGTTTAATGGAGCTATTTGGATATTTTAAACGGGCACAGTTGAGTTAACTAATACATCACTTGAATCTCAGTTAATGCTAGTGGATCATTTGGCTGGCCGAGtgataaatgtaaagaaaagagaaaaatgttagTAATTTGTAGGTTTGGCTACAATgacaaccaaaaacaaaaaaaagatgtaggattaaaacattcttatattcacttttatttcgTGGGACCGCAATACCACATCCCGTAAGGTTGAAAGTGTaggaaattatgtttatttccaATGCTAATGTAAAGCAATTGTGTTGATTTTATTATAGGATGGATTATGTGTTCAAAATGTGGGCCTCGCTACAGAAACTTCTGAATGTAGAGCTTTTCTTTTAATctttgggggggaaaaaaaagcgaAAGGTTTTGTGAGCAAAAGTGCAAGCCACAACACGCTTGGACATTTAAAAGCTGACAAACACTCAATGGAGTCAGAAACGTGACCAGGAGCATCTTCAGACATGAAACAGATTACCACTTTGTTCTTGGAGCAAAAGGATTGTGATGGAAATTTCCAAACTACTATGCCTTACGttcctttttctgttttcagaacTCAGACTGTTAAGATAAACGCGTCCACAGGCATTCTTACTACATCGCTAAAGCATGGCGCTGCAAGTTTGCGCAGCACGTGTCTGTGACACTAAGGAACACCCTCAAGAACTAGAGGTGATGTTACGTTCTCCGAAAGCTCTgaactctttctttttccttgttCATCTGGAGATTTCTCCCCATCTGATGTTAAGTGCTGAGCGTTTAGTGTTTTGTACATACCTTACGATCATTGCTTCTCCCTCCCCTACGAAATTTAAGGTAAAACGATGTTGCACTCTTTTGCACGTTAACAAATAAGCCTGCATGTTTTGACGACATAACCATCCTGTGCTGCCGCAACTGACTTAGGTTTGGCTGTTTGGCCACGTCAGCGGTCTGGTCAGTCTGtaaatacagtattattattgttattattaatatgttgcCCGTGTGGGGAAGTGGATAAGTGCAAAGCTCAAATGGGTCTCACAGAGTTGaccaaaatgtgtgtttttctcagacTGTGAACCAGACCATATTAGAAATTAAGGACAGACATTTGAAAGCACCCTACTTTCCTTAAGTATTATATACTGGGGCATGTGGCTTTTATTGGTATGCTAAGTGTGCGTACCTTCGTTTGTTGCAGCATTTCTTTCTAATGGTTTTTAACCGGTTCGGAACATGAACCAACATTTTGGTTTAGACTGGGGCTATTCATATAAAGAATCTGTTAATGAAAGAACAAAGCCAACTGCGAGGATCAACAATGCAAGTATTAAGTTAAACGTGGTCCCTTGATTTTTCCTCAAATGTTGACCTCTAATGGTATTCCATACAATAATTCACTACGCATGTTAGATTTTACGTTTTGTCATTGGACACAGATACACTcttgtatttataaatttatttcatttcctgTCCTAATGTacagtttttgttctttttttcttttttttttttttcaaaggcttGTGATAGATTTACACCACCCTGAGTTTGGCCTAGAATTAAAACAACCAGAAACATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105574 lncRNA upstream 5939 18543774 ~ 18543998 (+) True G71334
TU105573 lncRNA upstream 8601 18540883 ~ 18541336 (+) True G71333
TU105571 lncRNA upstream 11237 18538480 ~ 18538700 (+) True G71331
TU105387 lncRNA upstream 519389 18028361 ~ 18030548 (+) True G71221
TU105314 lncRNA upstream 907499 17641910 ~ 17642438 (+) True G71167
TU105770 lncRNA downstream 136983 18747911 ~ 18892052 (+) True G71442
TU105772 lncRNA downstream 206210 18817138 ~ 18892052 (+) False G71442
XR_006251757.1 lncRNA downstream 278995 18889923 ~ 18893969 (+) True LOC122351431
TU105801 lncRNA downstream 282623 18893551 ~ 18893849 (+) False LOC122351431
TU105813 lncRNA downstream 369385 18980313 ~ 18985811 (+) True G71457
XM_043248059.1 mRNA upstream 548 18546236 ~ 18549389 (+) True nifk
XM_043249580.1 mRNA upstream 12886 18518212 ~ 18537051 (+) True cacnb4a
XM_043249187.1 mRNA upstream 39911 18500302 ~ 18510026 (+) True stam2
XM_043249667.1 mRNA upstream 124869 18416183 ~ 18425068 (+) True sec22a
XM_043249361.1 mRNA upstream 146832 18368743 ~ 18403105 (+) False pdia5
XM_043249635.1 mRNA downstream 1068 18611996 ~ 18619387 (+) True tfcp2l1
XM_043248380.1 mRNA downstream 9958 18620886 ~ 18626414 (+) True ddx18
XM_043248379.1 mRNA downstream 24180 18635108 ~ 18642486 (+) True plcd4b
XM_043249208.1 mRNA downstream 38284 18649212 ~ 18652922 (+) False LOC122351849
XM_043249207.1 mRNA downstream 38303 18649231 ~ 18652922 (+) True LOC122351849
XR_006251866.1 other upstream 1330 18548481 ~ 18548607 (+) True LOC122352188
XR_006251864.1 other upstream 2655 18547160 ~ 18547282 (+) True LOC122352186
XR_006251816.1 other upstream 600630 17736006 ~ 17949307 (+) False lrp1bb
TU105274 other upstream 1210315 17339127 ~ 17339622 (+) True G71130
TU105185 other upstream 1343432 17203797 ~ 17206505 (+) False jam2b
XR_006251851.1 other downstream 1067 18611995 ~ 18619387 (+) False tfcp2l1
XR_006251852.1 other downstream 1068 18611996 ~ 18619387 (+) False tfcp2l1
XR_006251742.1 other downstream 24178 18635106 ~ 18641180 (+) False plcd4b
XR_006251718.1 other downstream 71744 18682672 ~ 18688242 (+) False lmln
XR_006251717.1 other downstream 71744 18682672 ~ 18688223 (+) False lmln