RNA id: TU105682


Basic Information

Item Value
RNA id TU105682
length 2030
lncRNA type read_through
GC content 0.39
exon number 2
gene id G71389
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 18608827 ~ 18697031 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

attttaaaaaaaaaaaagaacaaaaactgtACATTAGGAcaggaaatgaaataaatttataaatacaagAGTGTATCTGTGTCCAATGACAAAACGTAAAATCTAACATGCGTAGTGAATTATTGTATGGAATACCATTAGAGGTCAACATTTGAGGAAAAATCAAGGGACCACGTTTAACTTAATACTTGCATTGTTGATCCTCGCAGTTGGCTTTGTTCTTTCATTAACAGATTCTTTATATGAATAGCCCCAGTCTAAACCAAAATGTTGGTTCATGTTCCGAACCGGTTAAAAACCATTAGAAAGAAATGCTGCAACAAACGAAGGTACGCACACTTAGCATACCAATAAAAGCCACATGCCCCAGTATATAATACTTAAGGAAAGTAGGGTGCTTTCAAATGTCTGTCCTTAATTTCTAATATGGTCTGGTTCACAgtctgagaaaaacacacattttggtCAACTCTGTGAGACCCATTTGAGCTTTGCACTTATCCACTTCCCCACACGGgcaacatattaataataacaataataatactgtatttaCAGACTGACCAGACCGCTGACGTGGCCAAACAGCCAAACCTAAGTCAGTTGCGGCAGCACAGGATGGTTATGTCGTCAAAACATGCAGGCTTATTTGTTAACGTGCAAAAGAGTGCAACATCGTTTTACCTTAAATTTCGTAGGGGAGGGAGAAGCAATGATCGTAAGGTATGTACAAAACACTAAACGCTCAGCACTTAACATCAGATGGGGAGAAATCTCCAGATGaacaaggaaaaagaaagagttcAGAGCTTTCGGAGAACGTAACATCACCTCTAGTTCTTGAGGGTGTTCCTTAGTGTCACAGACACGTGCTGCGCAAACTTGCAGCGCCATGCTTTAGCGATGTAGTAAGAATGCCTGTGGACGCGTTTATCTTAACAGTCTGAgttctgaaaacagaaaaaggaaCGTAAGGCATAGTAGTTTGGAAATTTCCATCACAATCCTTTTGCTCCAAGAACAAAGTGGTAATCTGTTTCATGTCTGAAGATGCTCCTGGTCACGTTTCTGACTCCATTGAGTGTTTGTCAGCTTTTAAATGTCCAAGCGTGTTGTGGCTTGCACTTTTGCTCACAAAACCTTtcgcttttttttcccccccaaagATTAAAAGAAAAGCTCTACATTCAGAAGTTTCTGTAGCGAGGCCCACATTTTGAACACATAATCCATCCTATAATAAAATCAACACAATTGCTTTACATTAGCATtggaaataaacataatttcctACACTTTCAACCTTACGGGATGTGGTATTGCGGTCCCAcgaaataaaagtgaatataagaatgttttaatcctacatcttttttttgtttttggttgtcATTGTAGCCAAACCTACAAATTActaacatttttctcttttctttacatttatcaCTCGGCCAGCCAAATGATCCACTAGCATTAACTGAGATTCAAGTGATGTATTAGTTAACTCAACTGTGCCCGTTTAAAATATCCAAATAGCTCCATTAAACCTTTAACACCACTTGCAAACATGAATAagttattactaataaatgtaGTTAACGAATCACCTCTTCGGGAGATGAAGATAGCCTGTTCGCTCCAATTAAGGAAAGCTATGCCAATCATGGAAGatctgttccctatcaaaaaGCCAGCATGCAAGTTTCTCGATCCGAACCCCTTTACATTCAATGTTCCACAGATGGAAAGATGCATGAGACATTAACTAAGAGGCTTTCAGGAGTTGGacgaaaacaaaaatgtctgaTTGCAGTGAGCAACACATCTCTCTGGGAAAATCCAGCAAGACTGTGATGaagcgataataataataaaaaaaaaaaaaggatgtctGGAGGAGGCACAACTATTTTCCCAAATGCACGCGTAGGGCACTGATTAGAGCACATCCGGCTAGCTGTGAGAAGACACGTCTGAAGaactgctgctgttgctgttggTGGTCTGGGCCCTCTTAATGTACAGATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105581 lncRNA downstream 97299 18511173 ~ 18511528 (-) True G71341
TU105579 lncRNA downstream 98818 18508440 ~ 18510009 (-) True G71339
TU105535 lncRNA downstream 242589 18251260 ~ 18366238 (-) False sema5ba
TU105536 lncRNA downstream 344327 18251260 ~ 18264500 (-) False sema5ba
TU105518 lncRNA downstream 382040 18222314 ~ 18226787 (-) True G71293
TU105832 lncRNA upstream 40725 18737756 ~ 18742225 (-) True G71471
TU105862 lncRNA upstream 214812 18911843 ~ 18972902 (-) False LOC122351248
XR_006251715.1 lncRNA upstream 244485 18941516 ~ 18972902 (-) False LOC122351248
XR_006251716.1 lncRNA upstream 244485 18941516 ~ 18972902 (-) True LOC122351248
XR_006251824.1 lncRNA upstream 554606 19251637 ~ 19254248 (-) True LOC122351981
XM_043249579.1 mRNA downstream 63676 18534652 ~ 18545151 (-) False si:dkey-219c10.4
XM_043249578.1 mRNA downstream 63676 18534652 ~ 18545151 (-) True si:dkey-219c10.4
XM_043249567.1 mRNA downstream 108933 18494086 ~ 18499894 (-) True hacd2
XM_043249266.1 mRNA downstream 115954 18427072 ~ 18492873 (-) True adcy5
XM_043248798.1 mRNA upstream 12197 18709228 ~ 18720447 (-) True tgfbr2l
XM_043248514.1 mRNA upstream 188413 18885444 ~ 18890055 (-) True myl1
XM_043249273.1 mRNA upstream 283247 18980278 ~ 19249175 (-) True LOC122351886
XM_043249274.1 mRNA upstream 283247 18980278 ~ 19249174 (-) False LOC122351886
XM_043249176.1 mRNA upstream 562698 19259729 ~ 19285223 (-) False ikzf2
XR_006251863.1 other downstream 38945 18569755 ~ 18569882 (-) True LOC122352185
TU105258 other downstream 1353336 17235872 ~ 17255491 (-) True G71118
TU104984 other downstream 1785052 16817140 ~ 16823775 (-) True G70986
TU104983 other downstream 1785133 16817140 ~ 16823694 (-) False G70986
TU104521 other downstream 2836963 15771421 ~ 15771864 (-) True G70663
TU106113 other upstream 1023467 19720498 ~ 19721737 (-) False ankar
TU106134 other upstream 1099226 19796257 ~ 19804599 (-) False glsb
XR_006251780.1 other upstream 1184793 19881824 ~ 19893315 (-) False mfsd6b
TU106614 other upstream 1792133 20489164 ~ 20503890 (-) False G71938
TU106615 other upstream 1792133 20489164 ~ 20503890 (-) True G71938

Expression Profile