RNA id: TU105770


Basic Information

Item Value
RNA id TU105770
length 4665
lncRNA type read_through
GC content 0.38
exon number 8
gene id G71442
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 18747911 ~ 18892052 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgttttttttttttttttttttttttttttttttttttttgttttttttttttttttttttttttttttTACTTTGTGAAAAGTTTATTATGAGAATTGACagaggcaaaaaataaattaagactCTGGGGATAGGGGAAGAGGTTTTGCAGCCAGTCCATTAATGGCAGTATATTTAGCACCTTTGACTTTGCGATCCAGGCCGTGAGGGGTCAAGGGGGtggtttgtatttttgtgtaactATGATGCCCCCCTACACCCCCACCCCTCACAGCCGTTCCGCTATGGAGAGGCTTGTCCCGGCACGAACAACACCAAGAAAATTAGCTGGAAAAAATATGAATGGCTTCCAAGAATGGACAAAAGAAATGGGAGTCAAGTGGAAAAAAATAGGAaacacaaataacaaaataactgtttatgACTAACATCCCGTGTCCCTTTCATCCATTTCTGAGTTGGTTTTGGAAACGTTGTGTGGATGTCCTGACATCATGGAATCTGGAGAAACGCTTCAGTTTCCTTACAACTCCAACTTCTTACACAGACATGATGTGTTTGACGAAAGCTGTTCAGAATGGAGAGATCAAATAGGTTTAGAATTACAACAAACATTGTCTGTAAATCCCTCAATCGTTAACAATTTCACTGTGGTTGGataaagaaatgattttaaCTGACCCTCATAGTTCACACAGCCATTTTCATCCTCCTGGCCTTGCATGAGAGCATCGATCTCAGTTTCAGACATTTTCTCACCTTGTTGACAAGACGATACGCAGCTCAGCACCCATTACTGTTCCATTGCCCTCCTTATCGAATACACGCAGACCCTCAACGTAGTCATCGTATGTTGCCTTGTTTGGGCTGTTGACCACAAACTGCAGCATGGGCAAGAAACCCTCAAAGTCCACTCTCTTGTTTGCCATGTCTGTAACATCTGCGGTGGGGTTGCCCAGGATCTTTGTAACCTCTTTGTTGGTTGGGTTCTGTCCCAATGCACGCATGATATCTGCAACTTGGTTGAAGGCTACTTTGCTGTCACCAACTCTGTCGAAAAGTCCGAAGGCCTCCCTGTAATCTGGAATTTGTGGAGAGATTATTTTAGGAAAAGATGAAGTGTGCACATTTGTTCCCAACAGGTTTCCTGAACACATCCCTCTCTGCCATTGGTTGATCAAACCAATAATCCTGCCCATGGGTCACACAATTGGATTATAGGGTACAATTATTACACAGCACCTAATTTTTAAAGATGTCCCCATTTATAACTTGAATGTCCAAGGCTTCTTTCTATTGCTAGCTGCTCCCAACTATTTTAGCTGGACAAAAGCAGTCCTTTAATATGCAAACTGCTATTACTtctcatattattatttgtctgtttactgcactttgttatttttttgatcTTCATTTTAgataaagttttagtaattttgtcatttgtataaatttttgttgtatttaaatgtctataattttagtaatttttatttccaacttcattattttattattataaatgtattattttcagtttataatCACATCAGGTTAAAGTAcatgaaaatgcataatatttccTTGAAACCTagttttttcaatatattttatcgTAAGTTCTTTTAGTTAATCAATAGTatcttttaatggttttagttttagttaagtATAATAACCCTGTTGGGAATCAACACATGAATGGCTTATAGTTAGGCTTTTTATGAGGCAATTTGAATGTAGAATTTGAATATTAAGTATGCCCAAGGAAATTCTGcacacacaacataaaaaaaaaggttttctctAAAACTGTATAAACAAAGTTTTTTGCCATAGGTCAGATTAGATTTAATTTCCAAATTTATATTGAAAATGGACAGACTGAATAATAATCAGTGCTCATGGCACACGTCATGGCAAGGAGACTAGGTGGTATGATGAGATGAGCTGCTAAAAGATTAATAGCTTCATCTGATTTCCACACAAAGCCAGCTGCCACCAAAGATGTGGCAGGGTCAGGGGGAGACATTCAAAGTGTCGTCTTGGAATTGATATGCTCGCCCAAGAATATAACTCCCTCCATATAAAGGCAGTACCATGTGAGCCCAGAATGCTGACTGCAGTGTAACTCACACCCAGGCTGCTGAAAACTCCCCTCATTGGGCAACGAACACATTCTTCCACGTAAGACGCAGGCCTGGACAATGGTGCAAATTAACTGTAAAGTTTGCATGAAACTGCTTGACCTTTATTCCACAACAGAAGCAAATACCAGAGCTCTTTGGAAATTTAACACAGGTTGCTTGCCtcaaaaaacttaaaatgttctatgcttttgaatgaactTCCTGCCTAAAGGCAGATTATAATTAGGATAACTAATAACTATTTTTCCcctatttttcattattttaagcGCTACACCCCATGCAATCTCACTACATATTTGTAAGCAAGGGTCATGAAAAATGATCTCACCTTCCATCTGGTCCTGGCTGAAATCGACCTGCAGGAAAACAAaggtactttttattttgtcccAGTGAAAGATAATATATTATGCTTAAGAACTGAAAGGTGATATAATACATGCTTAAGAGATCAGTGTGTTAtgtaaattcaaatatataaggCAAAATGTCAtgacagctttatttaaatcgGCTTTATATTATGTAGTGCCGTTATGTAAGGCAAAGAATGTATTTTGTCAATGGCAAATAtcacttttgtaaaataataatcagtaatgCAAATGGATTTTCCACAGCATAAAACAGGGGGACTATGTGCATGGCCTGAAGATGCTGAATGATTTTCAGGAAATGAGAAAATCCATCTCATCACTAGAGTTATGACAGGTGAGTCATTCACAAACAGCTGCTTTAATAGAAAACCAAAGAGTAAGAGCCCCAGATCTTGGCATGCTTAATTTAGTCCCTCAGCTGCTTACAGAACTTTAAGGAGCTCCATGTTTGGCTATGAGAACCTACTCCACTTTTGGCTATCTGGGCCAATCAGAAAAGGGGTGTTACGTTTGATTGTAGTtatgcagaaaacaaaaaaaaacaaaaacagaactaTCGGTGGTGATGAATCATCTGCCAATAATAGATattttctccagtcttcaggcCCAGAACAACCTTAGGCATCTGCTTGACTTAActcattaaacaaaataatatgctTAACAGATCATTAGGTTATCTACGTTCAGATATATGACTCAAACGTTTATGATGGCTCCATTTGAATCTGCATTGCGTAGTGCCTTAATGTCAAACACATTATGAATGCAATTAGCAACACAACCTTAATGCAGGCATTTTCACAGATAAGCTTGAGagactttaaaatacaaatataatggACTTTTTGCTTCATTAATTGCAAATTCATATAATAGACTAGGCCTACCTGCCATGCAGTACTTACaataatagattaataataacacaacaTTATTTTGctagaattaaaataatgtattaaccAATAAGCATTCTCCAGAACTATATATTAACACCCTCTCcagatttacatattttttaattttttctctctttttttttttttttttaaatctcattggTAATTTAGTAAAAACTGCAAAGCACGTTTATTTCAGCTAAGCTCTAGCAAGTAAATAACTACATTTACTTGTAGTAAATCTTAGAGAggaaaacccccaaaacaaaacacttcactGCTCATCTATCTGTTTGATGCCGTGCCGTTACCTTCACACCGGACAGATCTACTCCCGCGGGTTTAGGTGGGGCCACGGGTTCCGGCGCGGGAGCGGGGGCAGGTGCGGGCTCTGCTTTCTTGGCAGGCTCGGGCTTCTTAGCGTCCTTCTTGGGTGCCATTTTTTTAGTCTATTTGTCCGCCGGGAGGGAAGTCAACACAGGGAGTGGACCACAGCTTGGAGGATACTCAGCATTCTCAATCCTGGACTCTTGGGAAAGGGAGTTAGTGGAGTCTGAAAGTCTTGAGGAGGCCTCAGCTGCTGATGCCCGTTACCCCTCAAAGCGCACAGATTGTGGTCCCCCAGCTGTCATCAGGGCTCACCCCTGCTGACTAGAAGCACCTTCTCTAAAAACCTGCCCCCATCCACCTGCCTATCAGAACCAACAACCCCCTCTCCAGCTCTTAATGATTTTAACAGCTAATTCACTTTTAGCCTACTTGGTTATTTGGCATGGTTGTTGGGATGGGGAGGAGTCATTAAGTTTGATGGAAGACACAAGACGTCTCAAGATAACTTCTCTAATATGCAGAAGGTTTGGCGTACCATACATTTTTGGCCTTCATTACaaaccttttttgttgttttttgttgtattttcctatcaaaataataaatgataaacaatatCTTAAGCACCACCCCCAGTCAACATGTATACATTCatggttattttaattactaatcATAATCagtaatcatatttaattactATCGTCTTACAATGCTAAGTTAAACAAATTTCATATtataatgcagtaaaaatactaTGGTGATTCTATTCCCAAGGTGTCTGTAGAGAATATTTACAATAACATATTGATTTTGATAGGTGTCTCTCACATTATCCCACAGATTAGggtacaatgttttataataatagtttattctatttagtgccctttgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105574 lncRNA upstream 203913 18543774 ~ 18543998 (+) True G71334
TU105573 lncRNA upstream 206575 18540883 ~ 18541336 (+) True G71333
TU105571 lncRNA upstream 209211 18538480 ~ 18538700 (+) True G71331
TU105387 lncRNA upstream 717363 18028361 ~ 18030548 (+) True G71221
TU105314 lncRNA upstream 1105473 17641910 ~ 17642438 (+) True G71167
TU105801 lncRNA downstream 1499 18893551 ~ 18893849 (+) False LOC122351431
TU105813 lncRNA downstream 88261 18980313 ~ 18985811 (+) True G71457
TU105880 lncRNA downstream 358787 19250839 ~ 19251157 (+) True G71509
TU105888 lncRNA downstream 363978 19256030 ~ 19256233 (+) True G71517
TU105930 lncRNA downstream 646373 19538425 ~ 19543677 (+) True vwc2l
XM_043249454.1 mRNA upstream 7855 18734419 ~ 18740056 (+) True znf148
XM_043249398.1 mRNA upstream 14898 18721173 ~ 18733013 (+) True snx4
XM_043248797.1 mRNA upstream 39718 18692575 ~ 18708193 (+) True osbpl11
XM_043248184.1 mRNA upstream 58369 18682672 ~ 18689542 (+) True lmln
XM_043248163.1 mRNA upstream 65709 18675151 ~ 18682202 (+) True lss
XM_043248997.1 mRNA downstream 4550 18896602 ~ 18931462 (+) True cps1
XM_043248261.1 mRNA downstream 620802 19512854 ~ 19538462 (+) False vwc2l
XM_043248264.1 mRNA downstream 620802 19512854 ~ 19538461 (+) False vwc2l
XM_043248265.1 mRNA downstream 620802 19512854 ~ 19538452 (+) False vwc2l
XM_043248262.1 mRNA downstream 621821 19513873 ~ 19539692 (+) False vwc2l
XR_006251718.1 other upstream 59669 18682672 ~ 18688242 (+) False lmln
XR_006251717.1 other upstream 59688 18682672 ~ 18688223 (+) False lmln
XR_006251742.1 other upstream 106731 18635106 ~ 18641180 (+) False plcd4b
XR_006251851.1 other upstream 128524 18611995 ~ 18619387 (+) False tfcp2l1
XR_006251852.1 other upstream 128524 18611996 ~ 18619387 (+) False tfcp2l1
TU105802 other downstream 9577 18901629 ~ 18907047 (+) False cps1
TU105807 other downstream 25518 18917570 ~ 18920415 (+) False cps1
TU105976 other downstream 729232 19621284 ~ 19621493 (+) True G71585
TU106041 other downstream 817333 19709385 ~ 19714402 (+) False ormdl1
TU106423 other downstream 1532949 20425001 ~ 20750851 (+) True G71825

Expression Profile