RNA id: XR_006251757.1


Basic Information

Item Value
RNA id XR_006251757.1
length 2759
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id LOC122351431
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 18889923 ~ 18893969 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGGGCTCTGCTTTCTTGGCAGGCTCGGGCTTCTTAGCGTCCTTCTTGGGTGCCATTTTTTTAGTCTATTTGTCCGCCGGGAGGGAAGTCAACACAGGGAGTGGACCACAGCTTGGAGGATACTCAGCATTCTCAATCCTGGACTCTTGGGAAAGGGAGTTAGTGGAGTCTGAAAGTCTTGAGGAGGCCTCAGCTGCTGATGCCCGTTACCCCTCAAAGCGCACAGATTGTGGTCCCCCAGCTGTCATCAGGGCTCACCCCTGCTGACTAGAAGCACCTTCTCTAAAAACCTGCCCCCATCCACCTGCCTATCAGAACCAACAACCCCCTCTCCAGCTCTTAATGATTTTAACAGCTAATTCACTTTTAGCCTACTTGGTTATTTGGCATGGTTGTTGGGATGGGGAGGAGTCATTAAGTTTGATGGAAGACACAAGACGTCTCAAGATAACTTCTCTAATATGCAGAAGGTTTGGCGTACCATACATTTTTGGCCTTCATTACaaaccttttttgttgttttttgttgtattttcctatcaaaataataaatgataaacaatatCTTAAGCACCACCCCCAGTCAACATGTATACATTCatggttattttaattactaatcATAATCagtaatcatatttaattactATCGTCTTACAATGCTAAGTTAAACAAATTTCATATtataatgcagtaaaaatactaTGGTGATTCTATTCCCAAGGTGTCTGTAGAGAATATTTACAATAACATATTGATTTTGATAGGTGTCTCTCACATTATCCCACAGATTAGggtacaatgttttataataatagtttattctatttagtgccctttgcattcatttaacatatttagatTGGAGACATCcaagttatttgacatatttgaatAGTTACATTCTCTTGtacttagttacttttataaagATGTAACTATTTGTTagaagtaactagtaactataactaatacattttttaaagtaacatgcTCTACTCTGGTGGGGACCGAAACTGTTTAGCCACCAAAGaacatgaggctgagtaaatgatgacataatacAAAATTTTAGGGAGGACTATCACTTTAATGTTAACTGAAGCATAGTAAAATGACACAGCATACTGTAAACCAATAGTATAAACACCTGTGCCTGTTTTACGTCATTAAATCATATGTTTTCAGTGATGTATCATGTGATCTACACAAGAATATCCTGTTTTCCAAAACAACCCCCGAGAGCTTTCCAAACATAAGTGAAGCTTCATTATAAAACTTCATCATAAACATGCTTCTCCAACTTAGATATGAAAACATCCCCTTCTGACTCTCCTAAAAACTTCACAAGCTATGCTAATGAGGCAAGCAAGCTTACACCCATCATACAGTTGAAAGCCTGCAGGGTGTCATGTCAAAGTGACGCACATCTCTGGATTAATTTAGGATCGTTTTAAGAGAGCAACAGGGAAGATGTGCCAACCATGAAGGAGGAGACAGGCACTCCAAGGAGAGGTGAAAAGGTCTTACGGTGAAACACTTCTCCATGTGTGGCTGAGGAaattacaatgtttttcttCGATAGCATACATTTTCTAGCCAATAAATAACATGCTATacttattttgtgtgtaaaatctTTGGTTAAACTGAGCTCTTTGTGGGGTCATTTTTTAATACTGTCATTAGTTCAAGTTGTAACTATGACTGAAACGTCACATAAAGTGAAGTGATTAGTACAGAGTGtctaaatatattgaaaaactAACTGAGACATTAGTCGCTGGTGTCTTATAACATTAAGATATGGGTCACTGTTTTCGAGAACATCTCCTTTAGGTTTTCAACCAGTGTGTTTCTTCTCACAGGCCACCTATCTCATATAGACAGCCTGTTAAAGAATTAAAGAGATTTTAAAGGACAAACTGTGTTCTGGTGAAGGAAACGTGGTGCTGCAGTCGTAAGAATGGAGCGGGAAGTGAGTGGCGTTATTTTCAGATAACCTTAAGGCAGAGCAACAGAAGCATTCTGACTTAGAGGTCACAGATTCTGCATAGTTCAGACCTCTGTGATTCTGATGTGAGCCCCCCATAACTAACAGTGCCACTCACCCTCCTGGACTTCTTACTAATTCCATAAGGAATGGGATTGTAACTTAGCCCCTGGACAGATGGGCCCTATTTATAGGCCTTCCTGAAGAGGTGCGAAGTTTTCTTGGGATCTCTCTGACGGGGGGCCACAACTCCTTAAGGGGGTTGATTGAGCGTCACCTGCCTATCCCTTAAAGCCGTCTCAGACAGATTATAAAGGGTACAGCTAAACAAAGCGGCACACAGCCTTGGAAAGTGACTGTAACTCCCAGTGAGGGTCTCCAAGCAGCCCTTACTGTTACAGAATATCTATTATAGTTCCTTGGAATTGCTGTCCATGATTCCACGTCACTAAAGAGGCCTGCCCATCACTCCTGGTTCAAGTGTTGAGATGGTATTAAATACAAAGTAATCGTTTGCATATCCTGGAGGCTGCTAGAATGTTCTAGTGCTGCAATAGATATCCTGAGATGTGGACGAACTGTTcagcatgataaaaaaaaaaacaaatgaaaaaaaaaccaaacaatgtCAGGCCCCAAATGTCatccataaatgtaaataataaataaatgctgtttatttatctgaatatttacatatttataaggGTGTCTGAAATAGATTCCtctctaaaatattaataaaaaattgttaaatattgaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105574 lncRNA upstream 345925 18543774 ~ 18543998 (+) True G71334
TU105573 lncRNA upstream 348587 18540883 ~ 18541336 (+) True G71333
TU105571 lncRNA upstream 351223 18538480 ~ 18538700 (+) True G71331
TU105387 lncRNA upstream 859375 18028361 ~ 18030548 (+) True G71221
TU105314 lncRNA upstream 1247485 17641910 ~ 17642438 (+) True G71167
TU105813 lncRNA downstream 86344 18980313 ~ 18985811 (+) True G71457
TU105880 lncRNA downstream 356870 19250839 ~ 19251157 (+) True G71509
TU105888 lncRNA downstream 362061 19256030 ~ 19256233 (+) True G71517
TU105930 lncRNA downstream 644456 19538425 ~ 19543677 (+) True vwc2l
TU105958 lncRNA downstream 713016 19606985 ~ 19607201 (+) True G71581
XM_043248488.1 mRNA upstream 5598 18793081 ~ 18884325 (+) True map2
XM_043248492.1 mRNA upstream 5598 18793081 ~ 18884325 (+) False map2
XM_043248491.1 mRNA upstream 5598 18793081 ~ 18884325 (+) False map2
XM_043248495.1 mRNA upstream 5598 18793081 ~ 18884325 (+) False map2
XM_043248496.1 mRNA upstream 5598 18793081 ~ 18884325 (+) False map2
XM_043248997.1 mRNA downstream 2633 18896602 ~ 18931462 (+) True cps1
XM_043248261.1 mRNA downstream 618885 19512854 ~ 19538462 (+) False vwc2l
XM_043248264.1 mRNA downstream 618885 19512854 ~ 19538461 (+) False vwc2l
XM_043248265.1 mRNA downstream 618885 19512854 ~ 19538452 (+) False vwc2l
XM_043248262.1 mRNA downstream 619904 19513873 ~ 19539692 (+) False vwc2l
XR_006251718.1 other upstream 201681 18682672 ~ 18688242 (+) False lmln
XR_006251717.1 other upstream 201700 18682672 ~ 18688223 (+) False lmln
XR_006251742.1 other upstream 248743 18635106 ~ 18641180 (+) False plcd4b
XR_006251851.1 other upstream 270536 18611995 ~ 18619387 (+) False tfcp2l1
XR_006251852.1 other upstream 270536 18611996 ~ 18619387 (+) False tfcp2l1
TU105802 other downstream 7660 18901629 ~ 18907047 (+) False cps1
TU105807 other downstream 23601 18917570 ~ 18920415 (+) False cps1
TU105976 other downstream 727315 19621284 ~ 19621493 (+) True G71585
TU106041 other downstream 815416 19709385 ~ 19714402 (+) False ormdl1
TU106423 other downstream 1531032 20425001 ~ 20750851 (+) True G71825

Expression Profile