RNA id: TU105807


Basic Information

Item Value
RNA id TU105807
length 266
RNA type TUCP
GC content 0.55
exon number 3
gene id cps1
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 18896602 ~ 18931462 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGTGGCTCAGCCATGAATGTGGCATACGGTGAAGATGAGATGAAGCGTTTCCTGGAGGAAGCCACGCAGGTGTCACAGGATCATCCTGTGGTCATCACTAAATTCGTTCGCGGTGCCAGAGAAGTGGAGGTAGATGCAGTGGCTAGAATGGGCAAGGTTCTGGCTCATGCTGTCACAGAGCATGTGGAGGATGCAGGAGTGCACTCAGGAGACGCCACTCTCATGCTGCCCACCCAGACCATCAGTCAGGGAGCTCTAGAGAAGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251757.1 lncRNA upstream 23601 18889923 ~ 18893969 (+) True LOC122351431
TU105801 lncRNA upstream 23721 18893551 ~ 18893849 (+) False LOC122351431
TU105770 lncRNA upstream 25518 18747911 ~ 18892052 (+) True G71442
TU105772 lncRNA upstream 25518 18817138 ~ 18892052 (+) False G71442
TU105574 lncRNA upstream 373572 18543774 ~ 18543998 (+) True G71334
TU105813 lncRNA downstream 59898 18980313 ~ 18985811 (+) True G71457
TU105880 lncRNA downstream 330424 19250839 ~ 19251157 (+) True G71509
TU105888 lncRNA downstream 335615 19256030 ~ 19256233 (+) True G71517
TU105930 lncRNA downstream 618010 19538425 ~ 19543677 (+) True vwc2l
TU105958 lncRNA downstream 686570 19606985 ~ 19607201 (+) True G71581
XM_043248489.1 mRNA upstream 33245 18827080 ~ 18884325 (+) False map2
XM_043248261.1 mRNA downstream 592439 19512854 ~ 19538462 (+) False vwc2l
XM_043248264.1 mRNA downstream 592439 19512854 ~ 19538461 (+) False vwc2l
XM_043248265.1 mRNA downstream 592439 19512854 ~ 19538452 (+) False vwc2l
XM_043248262.1 mRNA downstream 593458 19513873 ~ 19539692 (+) False vwc2l
XM_043248263.1 mRNA downstream 594155 19514570 ~ 19539692 (+) False vwc2l
TU105802 other upstream 10523 18901629 ~ 18907047 (+) False cps1
XR_006251718.1 other upstream 229328 18682672 ~ 18688242 (+) False lmln
XR_006251717.1 other upstream 229347 18682672 ~ 18688223 (+) False lmln
XR_006251742.1 other upstream 276390 18635106 ~ 18641180 (+) False plcd4b
XR_006251851.1 other upstream 298183 18611995 ~ 18619387 (+) False tfcp2l1
TU105976 other downstream 700869 19621284 ~ 19621493 (+) True G71585
TU106041 other downstream 788970 19709385 ~ 19714402 (+) False ormdl1
TU106423 other downstream 1504586 20425001 ~ 20750851 (+) True G71825
TU106440 other downstream 1516743 20437158 ~ 20764175 (+) True G71835
TU106451 other downstream 1639227 20559642 ~ 20569276 (+) True G71842

Expression Profile