RNA id: XM_043248997.1


Basic Information

Item Value
RNA id XM_043248997.1
length 4551
RNA type mRNA
GC content 0.50
exon number 38
gene id cps1
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 18896602 ~ 18931462 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGCGCAACTGGAAGACATCGAAGAGGCTGTTCAACATGAAGataatCTCCAGGCTCAGACCGCGCATTTGGTGCTTGAAGATGGCACGAAGATGAAGGGCTACTCTTTTGGCCATGGTCACTCTGCAGCTGGAGAGCTGGTCTTCAACACCGGACTAGTTGGCTATCCTGAGGCTCTGACAGACCCCAGTTACCGAGGGCAGATCCTGACGCTCACCTACCCCATTGTTGGAAACTACGGTGTTCCCAATACACAGCAACTGGATGAGCTGGGACTGAAGAAAAATGTGGAGTCTGATCGCATTCAGGTGTCAGGACTGTTGGTTCAGGACTACAGTACTGAATACAGTCACTGGAACTCTGTCAAATCACTAGCACAGTGGCTTCAAGAGGAGAAGGTGCCGGCTCTTTTTGGGATAGATACCAGGATGCTAACAAAGATTATCAGAGACAAGGGTACCGTTTTGGGAAAAATTGAATTTGACGGACAGCCAGTGGAGATCACAGACCCAAACCAGAGAAATCTTGTAGCAGAGGTCTCAACCAAGGATGTTCAGGTGTTTGGGAAAGGCAATCCTATTAAAGTGGTTGCTGTTGATTGTGGAATCAAGCACAACATTATAAGACTACTTGTCAAGcGTGGAGCAGAAGTGCATTTAGTGCCATGGGACCAAGACCTGATGAATCTGGAGTATGACGGTCTTTTCATCTCCAACGGTCCAGGAGATCCTTCACTGGCAAAGAACCTTATTCGAAATGTCCGCCAGGTGCTGGAAAGTGACCGTCCTCAGCCAGTGTTTGGCATTTGTATGGGAAATCAAATCACAGCGCTGGCAGCTGGTGCACAGTCTTATAAACTACCAATGGGAAACAGAGGCCAAAACCAGCCAGTTGTGAACGTGATGACGGGCCAAGCTTTCATCACAGCTCAGAATCACGGGTATGGCATAGACAGTGGGTCCCTTCCTCCAGGCTGGAGTCCTCTCTTCATCAATGCAAATGATGAAACCAATGAGGGCATTATGCATAATACCAAGCCGGTTTTCACAGCTCAGTTCCACCCCGAGGCCAAAGGAGGACCCACAGACACAGAGTTCCTGTTTGATGCTTTCATCTCTCTGATAAGGAATGGGAAGGAGGGGAGCATTGCATCTGTGATGCCAAAGAAACCTGCTGTTCCTCAGAGAATCCAGGTGTCTAAAGTGCTGGTGCTGGGATCTGGGGGTCTGTCCATCGGTCAGGCGGGAGAGTTTGACTACTCGGGATCCCAGGCTGTCAAAGCTATGAAAGAGGAAAACCTACAAACTGTGCTGATTAACCCCAACATTGCCTCGGTACAGACTAACGAGGATGGCACCAAGCAGGCAGACTCTGTGTATTTCCTGCCCATCACTCCTGAGTTTGTAACGGAGGTGATCAAAGTAGAGCGACCTGACGGCATCCTGCTCTCCATGGGAGGACAGACAGCTCTCAATTGCGGGGTGGAGCTCTTTCAGAGTGGCGTCCTGCAAAAGTATGGAGTGCAAGTTTTGGGCACACCTGTGGACTCCATCATGGCCACTGAGGACCGGCAACTCTTTTCGGATAAACTAATGGAGATCAATGAAAAGATTGCTCCTAGTATTGCTGTTAAAACGGTGGCAGATGCTTTGAAGGCAGCAGATGATATTGGGTACCCTGTCATGTTGAGATCAGCTTATGCCCTGGGTGGCCTTGGCTCAGGCCTGTGTGCTAATAAAGAGAAGCTAGAGGACACTGCTTGCAAGGCCTTGGCCATGAGCAGCCAGATCCTGGTGGAGAAGTCCCTGCTGGGCTGGAAGGAAGTGGAATATGAGGTGGTTAGAGATGTTGCTGATAACTGTGTCACTGTCTGCAATATGGAGAACTTTGACCCTCTGGGCATCCACACTGGTGACTCCATCGTGGTTGCACCCAGCCAGACTCTGTCCAATGAGGAATACCACATGCTGAGAGAGACCGCTATTAAAGTAGTGCGTCATCTGGGCATTGTGGGAGAGTGCAACATCCAGTATGCCCTGCATCCGTCCTCTCTGGAGTACTGTATCATTGAGGTGAACGCTCGCCTCTCCAGAAGCTCAGCACTGGCTTCCAAAGCCACAGGGTATCCGCTAGCATTTGTAGCTGCTAAACTAGCACTTGGCATCCCATTGCCGGACATAAAGAATGCAGTGTCAGAGCAGACCACGGCCTGTTTTGAGCCCAGTTTGGATTATATTGTCACCAAAATACCTCGCTGGGATCTGGACCGTTTCCACGGGATGTCTCGGGAGATCGGCAGTGCCATGAAGAGTGTTGGAGAGGTCATGGCAGTTGGCCGAACCTTTGAGGAGAGCATACAGAAGGCTTTGCGTATGTGCCACCCCTCAGTGGACGGCTTTGTACCGCATCTGCCTCTAAAAAGAGCCTGGGCAGAGCAAAGAGACCTTCAACGAGAGCTCTCCCTGCCTTCAAGTACTCGTATCTTCTCCCTCTCCCAGGCCCTTCACAGTGGTGTGACTGTTGATCAAATCCATGACCTCACTGCCATAGACAAATGGTTCCTGCACAAACTGAAGCACATTACTATGATGGAGCAGCTCCTGGGTCAGTATAACAGTGCCACTGTGCCGAGAAATCTACTTCTGAAGGCCAAGATGGATGGTTTCTCAGACCGACAGGTTGGCCAGGCTCTGAACATCTCAGAGGAAGAATCTCGGGTGCTCAGGCTCAACCAGAACATAAGACCTTGGGTCAAACAGATTGACACACTTGCTGCTGAATACCCTGCAGCCACCAATTATTTGTATTGCACTTACCATGGTCAGGAGCATGACTTGGATTTTAAGGATCATGGTATCATGATTGTGGGTTGTGGTCCGTATCACATTGGCAGCAGTGTGGAGTTTGACTGGTGTGCGGTGTCAAGCATTCGTGCCCTTAGACAGATGGGCAAGCGTACAGTGGTGGTGAACCATAACCCAGAGACGGTCAGTACGGACTTTGATGAGTGTGACCGTCTGTACTTTGAGGAGTTAACCCTGGAGCGCATCCTGGACATCACACAGCAGGAGGGCTGCACCGGCTGTATAGTATCTGTGGGTGGACAGATCCCCAATAACCTGGCCATGCCCCTGCACCTGAACGGGGTGAAGATTCTGGGAACCAGTCCTCTTCAGATCGATCGTGCGGAAGAGAGATCTGTATTCTCCTCTATACTGGATGATCTGGGTGTAGGCCAGGCCCCGTGGAGGGCTCTCAGCTCACTGgaAGATGCGGTTTCTTTTGCCAGTAATGTGGGCTACCCTTGCCTCCTGCGGCCATCCTATGTTCTGAGTGGCTCAGCCATGAATGTGGCATACGGTGAAGATGAGATGAAGCGTTTCCTGGAGGAAGCCACGCAGGTGTCACAGGATCATCCTGTGGTCATCACTAAATTCGTTCGCGGTGCCAGAGAAGTGGAGGTAGATGCAGTGGCTAGAATGGGCAAGGTTCTGGCTCATGCTGTCACAGAGCATGTGGAGGATGCAGGAGTGCACTCAGGAGACGCCACTCTCATGCTGCCCACCCAGACCATCAGTCAGGGAGCTCTAGAGAAGGTCTCtactgctacACAGAAAATTGCTAAGGCGTTTGAGATTTCAGGGCCGTTTAACACTCAATTTTTGGTGAAGGGAAACGATGTAATGGTGATCGAATGTAACCTGCGCGCATCTCGATCGTTCCCCTTCGTCTCTAAAACTATCGGTGTGGACTTCATCGACGTGGCTACCAGGGTCATGGTGGGAGAACCCCTGGACGAGTCGCGTCTGCCCTCCCTAGAAAACCCAATCATTCCAGTCGACTACGTTGGCATTAAGGCTCCTATGTTTTCCTGGCCTCGCCTGAGAGAAGCTGACCCTGTCCTGCGTTGTGAGATGGCTTCCACTGGAGAGGTGGCTTGCTTTGGACCAAACATCTACTCTGCCTTCCTGAAGGCCATGCTCTCTACGGGATTCAAGCTTCCCCAGAAGGGGATTCTCATTGGGATACAACATTCATTCAGGCCTAACTTCCTGTCCACTGCTCATCAGCTTCATGAGGAGGGCTTTAAGCTCTATGCCACAGAGGGTACATCAGCTTGGCTCAATGCTAATGATGTTCCAACAATCCCTGTTGCTTGGCCGAGCCATGAAACCAAAAATACAACCTTACCCAGAATCAACAGACTCATCAGTGAAGGACACATTGACCTTGTGGTCAACTTGCCTAATAACAACACCAAGTTTCTTAAGGACAACTTTCAGATTCGCAGGATGGCAGTGGATTACGGAGTACCACTTGTAACAAACTTCCAGGTTGTAAAGCTGTTTGCCGAAGCCATCAGGTATTCCAGCGATTTAGACGTCACCAGTTTGTTCCACTACCGCCAACGTGAGCCCAGACTGTCGAAGAGCTCTGCTGCATGGTTAACACGTAACCTCTAAAACAGGACAAAAGTTTGCCAGGTGGTGTTATCTGTTGGGGGGGCAACTGAACAGTTACAATTGGTTTACAGTCATACATCTAACTAG

Function

GO:

id name namespace
GO:0070409 carbamoyl phosphate biosynthetic process biological_process
GO:0006543 glutamine catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K01948 CPS1; carbamoyl-phosphate synthase (ammonia)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251757.1 lncRNA upstream 2633 18889923 ~ 18893969 (+) True LOC122351431
TU105801 lncRNA upstream 2753 18893551 ~ 18893849 (+) False LOC122351431
TU105770 lncRNA upstream 4550 18747911 ~ 18892052 (+) True G71442
TU105772 lncRNA upstream 4550 18817138 ~ 18892052 (+) False G71442
TU105574 lncRNA upstream 352604 18543774 ~ 18543998 (+) True G71334
TU105813 lncRNA downstream 48851 18980313 ~ 18985811 (+) True G71457
TU105880 lncRNA downstream 319377 19250839 ~ 19251157 (+) True G71509
TU105888 lncRNA downstream 324568 19256030 ~ 19256233 (+) True G71517
TU105930 lncRNA downstream 606963 19538425 ~ 19543677 (+) True vwc2l
TU105958 lncRNA downstream 675523 19606985 ~ 19607201 (+) True G71581
XM_043248488.1 mRNA upstream 12277 18793081 ~ 18884325 (+) True map2
XM_043248492.1 mRNA upstream 12277 18793081 ~ 18884325 (+) False map2
XM_043248491.1 mRNA upstream 12277 18793081 ~ 18884325 (+) False map2
XM_043248495.1 mRNA upstream 12277 18793081 ~ 18884325 (+) False map2
XM_043248496.1 mRNA upstream 12277 18793081 ~ 18884325 (+) False map2
XM_043248261.1 mRNA downstream 581392 19512854 ~ 19538462 (+) False vwc2l
XM_043248264.1 mRNA downstream 581392 19512854 ~ 19538461 (+) False vwc2l
XM_043248265.1 mRNA downstream 581392 19512854 ~ 19538452 (+) False vwc2l
XM_043248262.1 mRNA downstream 582411 19513873 ~ 19539692 (+) False vwc2l
XM_043248263.1 mRNA downstream 583108 19514570 ~ 19539692 (+) False vwc2l
XR_006251718.1 other upstream 208360 18682672 ~ 18688242 (+) False lmln
XR_006251717.1 other upstream 208379 18682672 ~ 18688223 (+) False lmln
XR_006251742.1 other upstream 255422 18635106 ~ 18641180 (+) False plcd4b
XR_006251851.1 other upstream 277215 18611995 ~ 18619387 (+) False tfcp2l1
XR_006251852.1 other upstream 277215 18611996 ~ 18619387 (+) False tfcp2l1
TU105976 other downstream 689822 19621284 ~ 19621493 (+) True G71585
TU106041 other downstream 777923 19709385 ~ 19714402 (+) False ormdl1
TU106423 other downstream 1493539 20425001 ~ 20750851 (+) True G71825
TU106440 other downstream 1505696 20437158 ~ 20764175 (+) True G71835
TU106451 other downstream 1628180 20559642 ~ 20569276 (+) True G71842

Expression Profile