RNA id: TU105832


Basic Information

Item Value
RNA id TU105832
length 4406
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G71471
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 18737756 ~ 18742225 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCAATCAAAAACACCCAATCAGAACTTTTCCCCCATGTCTTAGGCAAGGTATTGCATTAAAGTATGTTCTATGGAAATAATTCGGCTACAATAAAATggatacatataaaaatataaccaGTGTACAAAGACAGTCAGAGGACATGCACTTCccaataaaattaaatggctAAAACTATTCAGAAGAGCTCTCTTactaaataaattcattcagtttttcacGCAAATTAAGcttgaaagaaaataatgatcCACTATCAGTAACACCAGATAAAACTTTGATGCTCGAAACACCCAGTCAATAGAGAAGGACAACAGTCATGTGTCTAAAAGGATATGacctttaacaaaaaaaaaaaaaaaaaaaatactaaaaaggaaataaagcaaaaaaaacacattaaggtCTTCCCTCAAATTACCATTTCATTTTCATCGATTTCTGGAGCATCTGTAGCAGTacttaatgattaaatatttataatgcagaTATCACATGATATTGAAACGATAAATAACTTCCTAAGCATTTTTCCTCTGAGGGTGTAAGAGATCCATACAAGGTTTAATGAAATTGTAATtcttaaaattgcatttagagGCAATTCTTAAGAGGACagtacatttgtaattttacaatCAAAATCACAAACATGATTTTGTCACAAAAGTTGTGCTAAAAGTCATCAGGGACTGTAGGAATGAGCAAACCAAAATGGCagcaaatattaaattgttttgcaCTCTCTACACTCCAAGAAACGTGCACAGCAAAATGCACAACTTAAAATATACAACCTATTtacaacatgtaaaaataaaagggaCAGTAAAGGAATGCTTAGgcacacataataataataataataataataataataataataataccataataatcaaaaacagtaaaatgtctTTGACATTCAGAACATATGGActatgaaaaaaactaaatgaggaCACACAGGACTGCTCTTGGGCCTCAATGTATGAAACAATAAGTAAATGTGTGcgtaaattgtttatatatatttaaaaaaaaaaaaattaaacaatttaaatgagaatgtttttaaaaatgacttacaAAGAAATGAGTGTACAGTTTGGCATGATACTATGAATAGAAATCATAAAGCTAAGATTAATCAAGATACAGTTTTGGGGCAAGCAGGTAAATTTCTATAAACAatatgaaaacagaaacaaagctTATAATTTACATGATTAGTTATTAAGCTAACAATAAGAGATGTGCAATTAACAaatgtgtacatatacatattagtaCAACTTTACCAtacattacactttttttttgttctatatTAATCCAATAAGTAACAGCAAGTGAATCTGATACAAAGACATATGCTAATGGATGGGGGTTTTTGAGCcgaagaaaatgcattttaaaaaaattatctcaGACCATACATTCTTAAATCATCTTTCTTGATTTCACTCAACACTGATATAGATCATATCAGATTTTTGAATGTTTACGTTATGTAGATGGAAAGTGGTAACTgaaaagtgcttaaaaaaaaaactgcccaCAAGCTGAAAGTGCTATTTAAAGGGTAATGTTTATCAGATCTTGAGTGCATCTGGAAGCTCAAGAAACCAGACcagaacaaattaaataatcttCAGAAAACCAATACaccttttttttacaatacaaagtATTGTATTTTGACAACTGTAAGTCTGAACTAAGCACTGAGGCACAATGATGACACAAAGAAGTGCATACCTGTTAGAGCTGTTGCCCTGGACAACGGCTAAAACTGCATCCCCAAATGTGGGATATGTGAAAACAAATGCTCTATAGAGGCCTTGCTCCCTATGTGCACCTATATCTGATTGACAGTCTCTAACGAAAATGTACTGATTCCCACAAAAGGAGCATGAGAATATCTGTTTTTTGATCCAATAACCTCAGgagaaatgtgcaaaaatatttcatggtTATATAATctcattatataaaattatgggCTAGGTCCATACAAATTCAGTATGACAATACCTGCAGACTGCTCTAAACAAAATGTCTTGGAGAGATTCTTTAAGGGAGCAGagaatgcattatatatatatatatatatatatatatataaacattctaACAAGTAATTAAATGCACAAAGAAgattaaatacacaaattagCTTACAATGACAAAGGTGAGaaatgttaccttttttttttttttttataaacaaaagtGACTTGCAGTATATCAATCACAAAGTGCCTTACTCAAGTCTAGGGCACTAAAGTAAGGTCCTTTCAGTACCTCTCCAGACAACAAGTtacaaaactaattaaatacaaaaactgaTTGTAATGCTAGGCTAGAGTAGTTTCTACATTATTAGGTGAGTCCAGCCTGATGTTCCAGCAAAATAACTGAATGCTAACAAGAATATAAATCAGAATTGATCTTCGTATAGTTTTCTCTGGGGGAAAGCTACGTTGACCCAATAATTTAGACTACTACAACAGCATTGTTGTAATAGCTTGAATTCTTAATTTTAGAACACACAAGCTAGCTAATTTTGCAAGCCACTGTATGTTTGTCCCAAGCACTACATGTGTAACACACAAATAATGCAATGACGCAAAGAGTAACCCATAGTCTGATAATAAAGTCTAATGCGTGCATCACTCTGCTCCATTTGATTCTCGCACATGCGTGATTGTTTGAAGATGGAAAATCATAAGTATTTGCACAGAGATCACACTGCCTTCACTGACAGAACTATAAAGTgcctttaaaatgctttcatttgttAAAAGCTCCTGTTTAGCCAAAGGTTTGGCTGCTTGTAGCATCTGGAGATGAAGTTAGTTGAGTTCTTGTTTCACTAACAAGAGAGAACTCTGGGAAGTCCGTTCCTCCATGACCTCTCAGACTAACTTGTCCACTGGCAATGCTAAACTGTGAGGATATTCCAGATCGTGAGCTTGGGAATTGAGATCGAAAGTTCTGGTCAAAGGTAGCAATCTGAAATGTTTGACTAATGCTTTGCGCATCTGATTTTTTGGGAGAGGTCACTTGGTCGAGAAATCCTCTGTTGGCGAAACTGAAGAAGGGTTTGTCTCATCACCTGAAAAGGAGAAGGAGTGCTGGGAATCTACTAAAAGGCTAAAGTTAGGCTTCTCCAAGGTGGATCTCAATGGTGAGTTCATGCTCGGTCTGAACCGGGATGGGGATGTGAACTGCTTCTCCGTAGAAAACAAAGGCTGGCCAGCGAGACTGGCGCTGTCATTTACAAACGTAAGACTCTGGTTGTTCAGGTAGGTGTCATTCTGACTGGTCCTTTCCAATGCTTGCTGGAGAAACTTGGAGTACTCCTGTAGAAGGCTGGCCTTCTCGGCCGGGGGTGCTTGCGAGCTGGTTCCCAAAGTTTCGGTAGGACTGCTCTCATCGGAAGAGTTGATAGAGATACTGGATGTGACCTCGGTGTCTGCCACACTGAAGGAAATCTCTGCTTGCCCGTTGGCCTTATTGGAATAGTGATCAAGAAGAGTCTGCAGGACCTCGTCTGGAAGGACGTTTTTCTCGTTACTGGACTTGATCTCCACGTTCAGCGTCTGAGTCTCAGAAAGGATTGTTGCAGGAACGGTCTCATCGATGACGCTCGCTACAGCTGCCTGAGTGACAGAAGGTTGCGACACGATGCTGCTCACATTGAGCGCATAGTCTCGACTAGTGTTTGCCGCTTGAAGGTATCGCTTCTTCTTGAGAAATTGCATGGCATCGTCGTAATTTGTGCTGCTCCCagttggttttgtttgtccttcCTGTAGGGCGTGAACTGACTCCATGTCAGGATTGGTCTCAACATCCAAGAGGCCTTTGTTGTCAACAATTTCAAATGTGTATCTCGTTACTTTGCTCTCTTCGAATGAGGCCAACGGTGAGAGGCTCTGGGGCTGTTCTAGGGCTTGCGGTTTCAAACCTCTTCTGCTAGCGATTTTCTTCAGTACTAGTTTTGGAGGACTGATGATTTCATCATTAGATTCCACCTCTGCAAGATGCCTGTTGCCAGGCGGGGAATCAGGGAGCTCAACGGAATAATCTGTCACAACATACTCGTCCTTGACCTTGGTGTCTACAGTGTAAAGAGGAAGACACTCACTTTTGGCCAGTTGGtcttcttctgtcttctcctcGCTATTAGCTTCGACCACTTTGTCAACATTTGGACTTGTAAGGGCAACCCGACTTTTATCAGAGGTCTTCTGACGTTTCTTCTTGGGAAGCGTGCATTCCTTGGCAGGAAAAGAGAAGCCCAAGCTCTCTGAGGTACGAAGAGGGCCATCTTTGGCAGCTGCTTTCTGCACCTTCCTGTCCTTATTTTCATGGCACATCCGTCTGTGCTTTAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105682 lncRNA downstream 40725 18608827 ~ 18697031 (-) False G71389
TU105676 lncRNA downstream 42291 18608827 ~ 18695465 (-) True G71389
TU105739 lncRNA downstream 45667 18688498 ~ 18692089 (-) True G71424
TU105697 lncRNA downstream 83005 18653627 ~ 18654751 (-) True G71400
TU105581 lncRNA downstream 226228 18511173 ~ 18511528 (-) True G71341
TU105862 lncRNA upstream 169618 18911843 ~ 18972902 (-) False LOC122351248
XR_006251715.1 lncRNA upstream 199291 18941516 ~ 18972902 (-) False LOC122351248
XR_006251716.1 lncRNA upstream 199291 18941516 ~ 18972902 (-) True LOC122351248
XR_006251824.1 lncRNA upstream 509412 19251637 ~ 19254248 (-) True LOC122351981
XR_006251712.1 lncRNA upstream 701220 19443445 ~ 19459100 (-) True LOC122351235
XM_043248798.1 mRNA downstream 17309 18709228 ~ 18720447 (-) True tgfbr2l
XM_043248378.1 mRNA downstream 88701 18642470 ~ 18649055 (-) True znf142
XM_043248382.1 mRNA downstream 104152 18626417 ~ 18633604 (-) False ccdc93
XM_043248381.1 mRNA downstream 104152 18626417 ~ 18633604 (-) True ccdc93
XM_043249579.1 mRNA downstream 192605 18534652 ~ 18545151 (-) False si:dkey-219c10.4
XM_043248514.1 mRNA upstream 143219 18885444 ~ 18890055 (-) True myl1
XM_043249273.1 mRNA upstream 238053 18980278 ~ 19249175 (-) True LOC122351886
XM_043249274.1 mRNA upstream 238053 18980278 ~ 19249174 (-) False LOC122351886
XM_043249176.1 mRNA upstream 517504 19259729 ~ 19285223 (-) False ikzf2
XM_043249178.1 mRNA upstream 517504 19259729 ~ 19285209 (-) False ikzf2
XR_006251863.1 other downstream 167874 18569755 ~ 18569882 (-) True LOC122352185
TU105258 other downstream 1482265 17235872 ~ 17255491 (-) True G71118
TU104984 other downstream 1913981 16817140 ~ 16823775 (-) True G70986
TU104983 other downstream 1914062 16817140 ~ 16823694 (-) False G70986
TU104521 other downstream 2965892 15771421 ~ 15771864 (-) True G70663
TU106113 other upstream 978273 19720498 ~ 19721737 (-) False ankar
TU106134 other upstream 1054032 19796257 ~ 19804599 (-) False glsb
XR_006251780.1 other upstream 1139599 19881824 ~ 19893315 (-) False mfsd6b
TU106614 other upstream 1746939 20489164 ~ 20503890 (-) False G71938
TU106615 other upstream 1746939 20489164 ~ 20503890 (-) True G71938

Expression Profile