RNA id: XR_006251716.1


Basic Information

Item Value
RNA id XR_006251716.1
length 1251
lncRNA type inter_gene
GC content 0.44
exon number 4
gene id LOC122351248
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 18911843 ~ 18972902 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCCGTTCTCGCTGTTTGTTCCGATAGCGTCGTATATCGTATtttgttgcttattattttttcgTTCCCTTTTCCCTCATGCTGTAAATCATCACGCCTTTTGTGTTAGAAGAGAAGTGGACAGGTGCGGAAAGAAGAAAAGGCCGTGAAAGTGTCTTTGCAGAATGGCTGCGCCCTTGGAGAATTGCTGTCTGAAATGACAAACTTTCAGCGACTGGTTGAGCCAACAAGTGTTCCAGACACTCATAGAAATGCCAATCCATCCAAAGGAGTCCGGAAGATCGGCACTGGCAACATGCTTGTGACATGTGACGGACAGGAGGGGGTTTTCACTGCACATCCCAGTGCCAGGAACATGTGCCAGGCAGAGGACGGCAGGCAGCACCGCTTATGCCAAACTGTCTCTCCACGAACAAGGTTGGGAATATGAATTACCTGACTGGCAGTAGTCGTTCTGCTTGGCTGACAGCTGTCATGAACACACgggatggatggagagagacagagagggatgAGTCTGTCAGTTCCCCTCCCTCACTCCCTCCCCTCCTTCTCTCGAGGCATTTCACTCCTTTAAGCAGTTGTATAATGAAGAGCTTGCGGTCCTTCCCGTTTAACACAGGGCACTGGAGCAGGCATTGTGGGCCACTGAGTTTCTCACTCTTTTGCAGACCATCTACTTTGAAACTGTATTTCACCTCTAGCCAGACAACTGTAGGGAAGGCACTTTAGGTTAATTCCCCCAAATCACTGGGTCTCTGTGGTTATGTCAACACATTACTGTTTGAGACAGACATATCAGAGTTAAATCAACAAGTGGTGTTAGTTTGGGACAGAAGGTTTGTCTGAAAGATGTTGGAAAcatgtttgaaataataattttttgcaaTTGCATTTGATTACACTGTGGGAAGTATATGGGTGTGGGTAGTGTTTGGATGCTTAGTAGGGTCCAGTGAGCCTATTTGTTGGATTGTTCTCAAAGGgatcacaaaaatgaaaattgtcactACTTACCTCATTTTGTTCCAAGTTCAAGTCTCTCTTgattctgtggaacataaaataaGGTACTTAGAAATCTTTTTAACAGCActataaaaacagacatttttcaatttcaaataaatgctgcttcttTGAACTTTCTGGTCATCATAGAATGGTGATCATGGTTTTCACCAAAATACTAAACAGCACGACTGTTAAGAGTAAGTAAATACTTCCTGCGCACACAATCAGTGTATTAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105832 lncRNA downstream 199291 18737756 ~ 18742225 (-) True G71471
TU105682 lncRNA downstream 244485 18608827 ~ 18697031 (-) False G71389
TU105676 lncRNA downstream 246051 18608827 ~ 18695465 (-) True G71389
XR_006251824.1 lncRNA upstream 278735 19251637 ~ 19254248 (-) True LOC122351981
XR_006251712.1 lncRNA upstream 470543 19443445 ~ 19459100 (-) True LOC122351235
TU105981 lncRNA upstream 485885 19458787 ~ 19543847 (-) False G71587
XR_006251749.1 lncRNA upstream 524010 19496912 ~ 19508085 (-) True LOC122351387
XR_006251732.1 lncRNA upstream 546838 19519740 ~ 19525590 (-) True LOC122351304
XM_043248514.1 mRNA downstream 51461 18885444 ~ 18890055 (-) True myl1
XM_043248798.1 mRNA downstream 221069 18709228 ~ 18720447 (-) True tgfbr2l
XM_043248378.1 mRNA downstream 292461 18642470 ~ 18649055 (-) True znf142
XM_043248382.1 mRNA downstream 307912 18626417 ~ 18633604 (-) False ccdc93
XM_043249273.1 mRNA upstream 7376 18980278 ~ 19249175 (-) True LOC122351886
XM_043249274.1 mRNA upstream 7376 18980278 ~ 19249174 (-) False LOC122351886
XM_043249176.1 mRNA upstream 286827 19259729 ~ 19285223 (-) False ikzf2
XM_043249178.1 mRNA upstream 286827 19259729 ~ 19285209 (-) False ikzf2
XM_043249175.1 mRNA upstream 286827 19259729 ~ 19284034 (-) True ikzf2
XR_006251863.1 other downstream 371634 18569755 ~ 18569882 (-) True LOC122352185
TU105258 other downstream 1686025 17235872 ~ 17255491 (-) True G71118
TU104984 other downstream 2117741 16817140 ~ 16823775 (-) True G70986
TU104983 other downstream 2117822 16817140 ~ 16823694 (-) False G70986
TU104521 other downstream 3169652 15771421 ~ 15771864 (-) True G70663
TU106113 other upstream 747596 19720498 ~ 19721737 (-) False ankar
TU106134 other upstream 823355 19796257 ~ 19804599 (-) False glsb
XR_006251780.1 other upstream 908922 19881824 ~ 19893315 (-) False mfsd6b
TU106614 other upstream 1516262 20489164 ~ 20503890 (-) False G71938
TU106615 other upstream 1516262 20489164 ~ 20503890 (-) True G71938

Expression Profile