RNA id: XM_043248068.1


Basic Information

Item Value
RNA id XM_043248068.1
length 4881
RNA type mRNA
GC content 0.46
exon number 23
gene id ankar
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 19719942 ~ 19731794 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAACTTCAAATTTAATCGGACAACTCAATCTTTTGAGAGGAACAttgacagtattttttaaaagggaTTTAATTACCTTCAATCATATCGTCTGTATCAGAAAAAACGGATGAAGTTTTGATGGCGATCCCATCAGAACAGAGCAGCGAGAAGGCAGTTCGTGCTGCTTTAGCCGCTCAGTCTTTACTTCAGAAATATGACCGCAAAGATCTGCAAGAACTGCTCAGCCTGACCTCTTGGAACTGGTTGCTCGGTGCTGAGGGACACAACCTGCCTGTGGATGCACCTTCTGGCATCATCAGACAAATGAGGAACATATTAGCTCCCAACATCATTGTCCTGGCTCCCTTTGACTCAGGTTTGCCCCTGGATTACAGAATGGTCCACCAGATCGTGAGGGAGCTAACCGTGGGAATATACGGTTTTAACCAACTTCCCGTCGTCACTCTGGTACCCAACTATGACCAGAGCTCCACGTGCCAGCTACCACCAGCATATTACGACACAAAAGTCGGTCAGATACTAATAAACGTAGATTATACCATGAAGGCTCTCTGGCACGGGAGTTACATTTCTAGAGAAAAACGAATACGCTTCTCTGAGTTATGGAGATCCATCCTGGCCGTGGATTCAGATGGTGTTCCTCAAACAAAGAAAGATTTGCTTACAGAGTTCCTCACTGCAGGTTTAACAGACATCTCAGAGGATCCATGTTATCAGGACATTTATAAGGAGAGCACCGATGTAGACCCAACTTACGAACCCAACAGCGCAGAGGAGGAGAACCTCTTCTCACAATACTCAGAAAACATCCTGATCAAGCTGAGTGCCTACCTGACCTCTGTCCGCCAGCACCAAAACCTCTTTGTGTTTGAGGCGTCACATAGCCTGTCTGATGTGGTCCGACTCACTGAGGACAACATTGATCTGGCCACCTACCAGAGGCTACAGAAAAAGCTGTCAGGCCACATTATTCTGGTGAGGAAGCATCTTGAGAGGAATGCTGAAGTCTCCAGGGACCTCGTCTATCTGAAACTCATCACGTTCCTGGTGCCTCTGCTGATATCTTTAAGGAAAAAGATGCTGATTCCTAATTTTTCCAAAATGCTTCCACCTTTGTCAGATGACAAGCTGAAAACAGAACGAGAGGTTCCTCCGCATCTTCTTGGGCCAGACTTTGCCTGCAAGCACTTTCCACAGAAACCAAATCAGTATTTTCACCTTCATGGAGGAATTGAATTTGACGTGGGGACTCCTCCTCTTGATGACATCACTGAAGAAATGAAGGTGGCTTTCAATGCACTTCAGACTCAAGCAGCCAATTACCTATATGAGTTAATTCATCAGGACTCCACTTACAAAACTCAGTTTCCAATACCGCTCAGTGAGATTGAAGGGAAAAGCTATAATGCCATCTGCGTTGAGCTAGAGTCGCTTTATCCTCAACATAACTTGGTTCAGTGGTGGGGGGCTTTAAACACCTCCGTCAAAACCCTCAAAGGGAAGAGACTGCCCTTGACGGACATTGAGCTGCACGAGCAGTTCAAGAAAACATTTGGTGGTGCAAAAGCTATAAAGTGCAAGACCGTAGCATGCGGGCTGAAGGCAGCAGCAGAGAGAGGAATGTGTGCCGCGTTTCACTCGCTGAGTCGCAGGAACCCGGCGTCCCACCTGCATGCTCTTGATGAGCAGGGTCTCTCTCTGCTTCACCACGCTGCAGCCAACAACCAATCGCACATCATCCTCCAGCTCGCTGCAGCAGGAGTCAACCTCAACCAGATGCGCAGCGAGAGATTCTCTAACTCAGGAAAATCGGCTGTCGGAGGACAATTCCTAGATGGAGCAGGGCTCACTCCAGTGCACCTCGCTGCACAATGTGGCTCCCTTGAATCCCTGAACTGTCTTCTAGCACTGCGAGCAGACTACAAACTTGTGGACAAGAGGGGTTGGATGGCTATTCATTTTGCAGCCTTTTACGGCCAAGTGGCATGCATTCAAGCACTATGTAGGAAAGACCCTGTTTTATTGGAGACAAAGACCTCCGCTGagagTGGCAGTTCACCACTGTTATTGTCAGCGACCTCAGGTTCAGTGGAAACTCTGGACCTCCTGTTGTCCACTGGAGCAAACTGGAGAGAGGAAGACGGCAAGGGCAATAACACTGTCCACCTGGCAGCACTTTACTTTCACACAGATGTCCTTAGACACCTCATTCAGCTGAACTTGGATGGGCTTCCTGTGTGGAAGATTCTTGTCGaaatGATGCAAAGCAAGGGCACCAGGCATCTGGAGATGGCCCTCAGGTGTCTTGAGGCTCTTTGTATAAACATTGAGTCCTCCTGTGAGGATATTATGAAAGCAGGAGGTATTCCAGTGCTGGTGGGTCTGCTTTGTTCAGACAGACTGGTGGTGCAGTGCATGGCTACAGCTGTACTGTGCCATATGTCAGAGAATGCAAAGGTCTGTGAAGATCTAGTGCATCATGGTGTCGTACCAGTGCTGATGGAGCTCCTCGGCGGCCACCAGCCTGAGCTGCACTCTCGCTGTGCTGTTATACTGGCTGATCTGGCAGAACACAGCGAACGGCACCAAAACCTCATTGCTCAGTTGggTGGGGTGGCATTGGTAGTCAAGcttctgacctctgacctccaaGATGTGCTAGTAAATGCTGTGAGATGCATTCGTACACTTTGTGTCAAAAGTCCGTGCAACCAAACAGCTGTTGCACACGCTGGAGGAGTTCCACATCTCGTCGAATTCCTGTCTGTGAACTCTGATGTACTACAGGAAGAGGCCTGCTTGGCGCTCGCAGAGCTGGCTCGGGGTCACCAGGAGAACCAGGATCTCGTGTGTGAGGCAGGAGCGGTCAGCGCCCTGGTGCAAGCCCTGCGAGACGGCAAGATTCCTGCTAAGGTCAAGGCAGCCACAGCCCTTGAATCTATAGCCAGTCACAATCCAGCCATCCAGCAATGTTTCCTCGTGCAATCGGCTGCCAAGGATCTTTTACAACTTTTAAAGGTGTTCCAGCTGGATGTGCGGGAACAGGGTGCAATGTCTCTGTGGGCCCTGGCAGGACAAACTCTGAAGCAACAGAAACTCATGGCGGAGCAGATGGGCTACCCGGTCATCCTTGACCTTCTTCTTTCCTCTTCAGACAAAATGCAATACGTGGGGTGCCGAGCGGCGATAGCGCTTTGCCGAGATAGTCGAACCCATCAGGATGGCTTTTGCAGACAGTATGGGGTGCCGCCTTTGGTCCGTTTGCTTCGAGGGTCTCGAACAACATTGAAGACCCTGCTCGGTGTCATTAAAGCTCTGGGTTGTTTGTGCATAGGAGTGGCTCTCACTGctaacaaaaaaagtcaaaaaattatttacagagAAAAGGCCATTCCTACATTATTAGAGCTTTTAACAACCCACGCATCTCTGGAGGTCAAGGTGCAAGTGGCTAAGACTCTTGCTTGCGTGCTGCTCGGGAACCAAAAACTCCAGAGGCAATTCTGGGAACAACAGGACTTCTCTTACAATATCATTTTGGAGCTAATGGGGGCTGAGAACAAAAGCATTCGTCTGGATGCTGGACACGCGTTGTCCCTGTTTGCTTACAACAACAAAGCCCAGCAGAAGGCAATTCAACAAACGGGAAGAATTCTGATGAACACATTTGAGACGTTTTTGAGTTCCGACAAGGAGACAGAAAGAGCAAAAGCTGCATTTCAGATAGTTGTGTTAGACAGAGTAATCAGTGGATCAGATGAAGTGACTTTGACCGCAAGAGGAGTCACTGTTCTTGTTGAATCGCTGCAGTCCGACCAATCCACCACTGTGGTTATTGCAGCTCAACTACTTGCTAGCTTGGTTCACACAAGAGTTGGTATTACTAATGCGATTGTCGGCATGGGTGCCGTAGAGCATCTTTCTGCTCATCTGGACTCAGACTACGAAGAGGTTCGAACTGCTTGTGCAAGTGCTCTGGGTTACCTGACCTCTAATCGATACGCTCATCGACAGCTCCTGGCGAAATGCAGAAAATCCCCTCGCACATATGACCTCCTGATGGAGAATTTAGCTGAAGATGCCAGAATATCGCAATTCTTTAGAGCGGAGTTTGAAAGACAGAGAAGAACAGGGCTTCCATCCCTCAGTTTGGAGATAAACGGCGGCCCTCCTGTGCCTCGCCGTGATAATAAAGGATTGGCGAAGAAAGCGAACGATAGGTGTAGTCGGTCAGCGATCCATGACAGAGAAAAAACAGCTCCTTTGCCACACCATGTAAGACAGAGGGCCAGAACCGGCAAATCCCAGAGTCAGAACGAGGTTGAATGAAAACGCGTGAAACTTCACGATTGAAAAAGAAATAACGTGAACTTTGAAATAAAGCGTTGGCAAAACagacacatttacatttctttaaataacaatttattaacaGATATAATTAACAGCATGTCAAGATCGTATCCTCAATTTTAATGGGGGAAGTTTGATTGCAGCATCTTTAACTTCTGAAGTGATGTCTAATCCAAGTGGTGCCCTTAAAATGAATGGACAATTTTATTACATCAAAACAAACTCCTATCATATACGATCAATGCTGGGTATATTACTTACAAACTGTCTGTTACCTGTTTAcaaattatttgatgaaaattaGTAACGTAATCTATTAGATTACACATATCAGGTAATCTAATCAGACTGCTTTTTGATGACTTTCAACCTAAGATTTGAATATAATTGTATtcaactgatataaaaatataaagacaaacaaaatacaTGTGCATTAAACACTACATTACATCAGAAATTCTTAAAATGGGTTTTTTGAGttgatgaaaagctaataattaattaaatcttaaaaatgtaatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106074 lncRNA downstream 7758 19709384 ~ 19712184 (-) True G71645
XR_006251727.1 lncRNA downstream 38543 19674731 ~ 19681399 (-) True LOC122351289
TU106096 lncRNA downstream 48778 19667000 ~ 19671164 (-) True G71667
TU105978 lncRNA downstream 176095 19537741 ~ 19543847 (-) True G71587
XR_006251732.1 lncRNA downstream 194352 19519740 ~ 19525590 (-) True LOC122351304
TU106128 lncRNA upstream 59453 19791247 ~ 19791560 (-) True G71692
TU106135 lncRNA upstream 67818 19799612 ~ 19807087 (-) True glsb
TU106137 lncRNA upstream 67818 19799612 ~ 19804599 (-) False glsb
TU106132 lncRNA upstream 68613 19800407 ~ 19807087 (-) False glsb
TU106138 lncRNA upstream 76072 19807866 ~ 19810123 (-) False glsb
XM_043249432.1 mRNA downstream 3499 19713485 ~ 19716443 (-) True adat3
XM_043249043.1 mRNA downstream 10972 19684890 ~ 19708970 (-) False pms1
XM_043249042.1 mRNA downstream 10972 19684890 ~ 19708970 (-) True pms1
XM_043249044.1 mRNA downstream 10972 19687834 ~ 19708970 (-) False pms1
XM_043249045.1 mRNA downstream 10972 19687837 ~ 19708970 (-) False pms1
XM_043249547.1 mRNA upstream 2106 19733900 ~ 19736121 (-) True asnsd1
XM_043249549.1 mRNA upstream 4239 19736033 ~ 19737211 (-) True LOC122352057
XM_043249391.1 mRNA upstream 18748 19750542 ~ 19766793 (-) True wdr75
XM_043249392.1 mRNA upstream 18748 19750542 ~ 19766787 (-) False wdr75
XM_043248998.1 mRNA upstream 64458 19796252 ~ 19829475 (-) False glsb
XR_006251863.1 other downstream 1150060 18569755 ~ 18569882 (-) True LOC122352185
TU105258 other downstream 2464451 17235872 ~ 17255491 (-) True G71118
TU104984 other downstream 2896167 16817140 ~ 16823775 (-) True G70986
TU104983 other downstream 2896248 16817140 ~ 16823694 (-) False G70986
TU104521 other downstream 3948078 15771421 ~ 15771864 (-) True G70663
TU106134 other upstream 64463 19796257 ~ 19804599 (-) False glsb
XR_006251780.1 other upstream 150030 19881824 ~ 19893315 (-) False mfsd6b
TU106614 other upstream 757370 20489164 ~ 20503890 (-) False G71938
TU106615 other upstream 757370 20489164 ~ 20503890 (-) True G71938
TU107092 other upstream 1977494 21709288 ~ 21726820 (-) True G72363

Expression Profile