RNA id: TU106132


Basic Information

Item Value
RNA id TU106132
length 2624
lncRNA type sense_over
GC content 0.38
exon number 3
gene id glsb
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 19796252 ~ 19829475 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tcaagtCCATTATAGAACATGAAAATAAACCAGGctattatttaacttatttaaccCCACCCACATTCATGTTATGGTTATCCTATTTATctgtatgtaatgttttaatgttaatctATTTTGTTCAGGTGGGTCTTCCAGCCAAGTCAGGTGTGGCTGGAGGTATTCTGCTGGTTGTGCCCAATGTAATGGGCATCATGTGCTGGTCTCCTCCATTGGACAAACTTGGCAACAGTGTCCGGGCATCCAGTTCTGCACGGATCTGGTGTCCTTGTTCAACTTCCACAACTATGACAACCTGAGGCACTTCGCCAAGAAGCTCGATCCTCGCAGAGAGGGAGGGGACCAGCGGCTGTACACCTTCGGACCCCTGGATTACGAGAGCCTTCAGAAAGAGCTGGCTCTCAAAGACACTGTGTGGACAAAAGTCTCGCCCACTGAGTGCAATGAGGACAGCTCCACTACTGTAGTCTATAGGATGGAGAAAGTCGGAGAAGGCAACTAAAACGGATCTGACTCACCTCGGCGAGCTCTTtgacagtatatatttatgtacttcaacgattatttattttcaatgaatCTCATTCTGCGCACATGTTAGTTCTACACCAGTCTCGATGAATATGACTATGGTAGAGGATATGTCTAAAGCCTTATGCCTTGGCCTGTGTTTATCTATCTGTGCTAATGTTTAAAAGCATAGCGGAGGGCTTTATTCTTCACTTGGAATGCATGGACTCTAGATGCGGTGTGGTTTATAGTCACAGACCAGCAGGTGTTTTTTCGGGGTATATTGAGCATTGGCTGCTGAACAGAGACTACAGGTGATTCTGTGTTGCTCTGTGATTATATATTGTGGTCTCGCTCGTCTTCAGTGAGGTCTTTAGCTTGGTGTTACAAAGACATGGACTTTTTCTAAAACTTCTTGTTACATGTGCTGTGACTCAGCATGGCCTTCACtctaaaagaaagcaaacattcgctcagaaattaaaattcagtcatttttattcaccCTCGTGTTCTTTTAAGCCCATATGTCGTTGGTGTTTCTGtggaatacaaaatatatttgtaagaaTTCTTTCATgctcattttttacagtgttccATATGGAATATCATAACAATAACCATAATAATTGTCCATCTGGATACTTTTtttgtgggaaaaaataaaaaaatttttttttatatttcctttgagtaattatcattatcttttaataataacacttaTCAATCACTATTGTTTAGCATTGATTCATCTTGATTTCAGTCTATTCCTAAAACAAAGCTGGTATATAGTTGGCCAGCCAATGAAAGCAACCGTTtacacagaaattaaaattcgGTCATTATTTGTTCACTCTCATATGTTATTGTTTCTGTCACACACCGTCATTTTCTTTCAACCTTTTCCCATATACCAGTAAAAAAATCTCCATAGAATTACAATGTCCATCTGGCTATAATTGAAGTCTCGCGAAGCCatatatttgcttttataaGATAAAAGATGGACATTAAAGTGTTTGAAAATAGCATTTTGGTGCAAATTTAGTATCTGAGTTCAAATGCATTATCATTGAATAACACTGAATAAACGTTTCTCGCATAAAGCTATATTACTTGGAAAGCGTGTGCCAACTATGGTAATACATAACCTATTAGTGATATGCATATGACATAACACATAAAGGAGAagtagtgtttttctttttggccAAACGTTTGATTAGGGCACAGTGTGATTTGATCGCGACCGAAGCGTAAAGTTAAAAGGACCTCATGTAGCACCTGGGTTGTTCATTTTCAGATAAGTCACAGAGCGTTCCTGCTCAATTGCTTGTCTCGGAGAGGACTGTTGTAATGTGCAGTGTTTGCATCACAGAGCCGCTCTAGTGCTGCTCAGCAGCCAGCTGAACCCTGCTGTCAGAGCGTCTTTTCAGTGAAATCAATAATGTTACAAACCTTCCACCTGCCCTCAGTTCCGTTTCCGTCTGTATATCCTCATATGTTATCACTAGAAACATTTATGCACCTTATTAATAGCTCAAAATGTTGGTTTATATCAAACTAAGCCTGGATAAGCTTCTGAAGTGGTTTTATTGGTGGAAAGATGCTGACCTTATCAGGAAGATATTAAGTATTATatgttttttcgtttttttttttttatgtgttgcaaaattattttttttgccttttaaatttaaatgttcattttatgttCGCATGATTCGCTTTGCTTTCACAGGCTTGTATATTTCTGGGTTTTGTTGCTTAGTTTcacaagtgtgtgtttttgtattataattttcacGTCTTGTTTTTGGCGCTGCTTTAGCGGAGAAGTGTTTTTCATGCTCAGCTTTaacaaaacagtcaaaatatGAGCTCATTACAGTCTGGCTTGAGCAAGCAGCTCGCTCTGATTACTTGAACAGCTGTCAAATACTTCATCACTTTATATTATCATCTGGTTTTACGCTGTCATAACAGTTCCGTTTGCTTTCTCATTGTGTATTTATGTCATTTGttctggttttctttttttgtatcattaataaatgtatttaatctcATTGTTACCCAAAATCAGTTGTGttccgtttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106128 lncRNA downstream 8847 19791247 ~ 19791560 (-) True G71692
TU106115 lncRNA downstream 69168 19730736 ~ 19731239 (-) False ankar
TU106074 lncRNA downstream 88223 19709384 ~ 19712184 (-) True G71645
XR_006251727.1 lncRNA downstream 119008 19674731 ~ 19681399 (-) True LOC122351289
TU106096 lncRNA downstream 129243 19667000 ~ 19671164 (-) True G71667
TU106138 lncRNA upstream 779 19807866 ~ 19810123 (-) False glsb
TU106145 lncRNA upstream 41252 19848339 ~ 19852587 (-) False nab1b
TU106184 lncRNA upstream 80088 19887175 ~ 19941547 (-) True G71727
TU106191 lncRNA upstream 109112 19916199 ~ 19922691 (-) True G71732
TU106551 lncRNA upstream 356036 20163123 ~ 20168604 (-) True G71912
XM_043249391.1 mRNA downstream 33614 19750542 ~ 19766793 (-) True wdr75
XM_043249392.1 mRNA downstream 33620 19750542 ~ 19766787 (-) False wdr75
XM_043249549.1 mRNA downstream 63196 19736033 ~ 19737211 (-) True LOC122352057
XM_043249547.1 mRNA downstream 64286 19733900 ~ 19736121 (-) True asnsd1
XM_043248068.1 mRNA downstream 68613 19719942 ~ 19731794 (-) True ankar
XM_043248999.1 mRNA upstream 26833 19833920 ~ 19852625 (-) True nab1b
XM_043248788.1 mRNA upstream 74463 19881550 ~ 19893314 (-) False mfsd6b
XM_043248790.1 mRNA upstream 74727 19881814 ~ 19893315 (-) True mfsd6b
XM_043248791.1 mRNA upstream 74736 19881823 ~ 19893314 (-) False mfsd6b
XM_043248317.1 mRNA upstream 190388 19997475 ~ 20029805 (-) False obsl1b
TU106113 other downstream 78670 19720498 ~ 19721737 (-) False ankar
XR_006251863.1 other downstream 1230525 18569755 ~ 18569882 (-) True LOC122352185
TU105258 other downstream 2544916 17235872 ~ 17255491 (-) True G71118
TU104984 other downstream 2976632 16817140 ~ 16823775 (-) True G70986
TU104983 other downstream 2976713 16817140 ~ 16823694 (-) False G70986
XR_006251780.1 other upstream 74737 19881824 ~ 19893315 (-) False mfsd6b
TU106614 other upstream 682077 20489164 ~ 20503890 (-) False G71938
TU106615 other upstream 682077 20489164 ~ 20503890 (-) True G71938
TU107092 other upstream 1902201 21709288 ~ 21726820 (-) True G72363
XR_006251764.1 other upstream 2364376 22171463 ~ 22223667 (-) False cerkl

Expression Profile