RNA id: XM_043248999.1


Basic Information

Item Value
RNA id XM_043248999.1
length 1793
RNA type mRNA
GC content 0.56
exon number 14
gene id nab1b
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 19833920 ~ 19852625 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGAGAGCAATGTAGCAAGCGCGGAATATCCCAATTCTGGCAGTAGGGGAGAGAGCGGAAACCAACTAGTTAGAGTGTCCCTCCGTAGTTCAAACTACAGAGTGCGTGAGAGTTAATTCAAAAGAGAGAGCCGAAGGAGCGTCGCTTACCCGCCGAACGCGCGGCACCTCGCTGGACGTCAGGTGAAGCGTCGCGTAAATCAACGGAGCGTCACATTTCAGAACTTTAACAATCAAACAAGCAGACGGCGCTTTTGGAAGAGTTTTGGTgggaaaagacaaagaaagaaaaccaaaagGTATGGCAGCGACTTTACCCAGAACCCTTGGGAGTTGCAGCCTACCGCGCATCCTTCAGAGGGCCAACCTGCTGTGCTACTACGACGCCTTTATCCAGCAGGGCGGCGATGGCGTTCAGCAGCTCTGCGAGGCTGGCGAGGACGAGTTTCTCGAGATCATGGCGCTCGTAGGCATGGCCAGCAAGCCGTTGCACGTCAGGCGCCTACAGAAAGCTCTGCGAGATTGGGTCACAAACCCTGCCCTGTTCAATCAGCCCCTCACGTCTCTTCCGTCTGCAGCATTCCGTCTACAAGCTGCCCGAAGGTCACCCACATTGTTACCTGGGAATGGCGCCCGGGGAGAGACCCAAGTCAAAGTGCCCAAGTGTTTGGCAGCTGCTTGCGTTGATCCCGGAAAAGGAGAATCGGGTAACGGGAACTCTTCTGCCACTGTTTCGCCCCTCCAGAGTGGAAGCGAGCCACGTTTTTGGGCAGGTCATGGCACGGAGAGCGAGCACAGCCTGTCCCCGGCTGAACTGGGCTCTCCGTCTTCCCCTCGGGACGGCCTGGAGGCGCTAGATGCGGCTGCTGTTCAGTCCGTGGCGGATTGCGTGGAAAGAATCGCTCAGACTTTGCCCAAGAGTGACCCCGGAGAGGTTAAAGAACTGTTGAAGGGAAATAAGAAGCTTGCCAAGATGATCAGCCACATCTTCGACATGAGCGACGAGGATCCGCACAGGGAGGAGGAAATACGCAAGTATAGCGCCATATATGGGAGATTCGACTCAAAAAGGAAGGATGGAAAGCATCTGACTCTGCATGAGCTGACAGTGAATGAGGCTGCGGCACAGCTCTGTATGAAGGAGGTGGCCTTGCTGACTCGCAGAGATGAGCTTTTCGGACTGGCCCGTCAGGTTTCCCGAGAGGTCACATACAAATACACCTACAGAACCAGCAAATCTCGATGCGGTGACAGAGATGAGCCGTCGCCCAAGAGAATTAAAACCGAGGAGGGCTGTTTTGACCTCCAGGAGGCGCTGCAGGCCATTCACATGCGCCAGGAGACCCTTAAGGAGCAGCTAGCCCACGCCAGATCTAAAGGAGAGGAGACGGTTGGGCGGAACATCCAGGTGACTGACTCTGGGCGTCTGTTGGCCAAGCAGATGGAGATACTGCATCCCGCTGCGGCGCAGGATAGACTGCAGGCTCTAGAGTGGGAGGTTCCACCGGGGCCCTACAAACACAGCACAGACAGGCAGAACAGCAGCGGGCTCTCTGCCGACAAAAACACTGACCAGCAGGGTGAGTTTAGAGGCGCTGAATCTGAGGTGACCAGCCAGAGGGCGAGTGCTTCTGGCGGAGACACAGCTCTTGGAAAGCAGCTGGCCAGGTTGAGGCATCATCACGCTAATGCAGGCAAGACGTCAGCAGCTACAGAAAGCGGAGGTGCATCTTCCACGTGCCTCAGCCTCTCTGAAAGAAAGACCATCAAATCGGGCCGGAAGATTCAGATATAG

Function

GO:

id name namespace
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K22388 NAB; NGFI-A-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106138 lncRNA downstream 23797 19807866 ~ 19810123 (-) False glsb
TU106135 lncRNA downstream 26833 19799612 ~ 19807087 (-) True glsb
TU106132 lncRNA downstream 26833 19800407 ~ 19807087 (-) False glsb
TU106137 lncRNA downstream 29321 19799612 ~ 19804599 (-) False glsb
TU106128 lncRNA downstream 42360 19791247 ~ 19791560 (-) True G71692
TU106184 lncRNA upstream 34550 19887175 ~ 19941547 (-) True G71727
TU106191 lncRNA upstream 63574 19916199 ~ 19922691 (-) True G71732
TU106551 lncRNA upstream 310498 20163123 ~ 20168604 (-) True G71912
TU106568 lncRNA upstream 362795 20215420 ~ 20218047 (-) True G71919
TU106549 lncRNA upstream 418433 20271058 ~ 20602822 (-) False G71912
XM_043248998.1 mRNA downstream 4445 19796252 ~ 19829475 (-) False glsb
XM_043249391.1 mRNA downstream 67127 19750542 ~ 19766793 (-) True wdr75
XM_043249392.1 mRNA downstream 67133 19750542 ~ 19766787 (-) False wdr75
XM_043249549.1 mRNA downstream 96709 19736033 ~ 19737211 (-) True LOC122352057
XM_043249547.1 mRNA downstream 97799 19733900 ~ 19736121 (-) True asnsd1
XM_043248788.1 mRNA upstream 28925 19881550 ~ 19893314 (-) False mfsd6b
XM_043248790.1 mRNA upstream 29189 19881814 ~ 19893315 (-) True mfsd6b
XM_043248791.1 mRNA upstream 29198 19881823 ~ 19893314 (-) False mfsd6b
XM_043248317.1 mRNA upstream 144850 19997475 ~ 20029805 (-) False obsl1b
XM_043248319.1 mRNA upstream 144850 19997475 ~ 20029805 (-) False obsl1b
TU106134 other downstream 29321 19796257 ~ 19804599 (-) False glsb
TU106113 other downstream 112183 19720498 ~ 19721737 (-) False ankar
XR_006251863.1 other downstream 1264038 18569755 ~ 18569882 (-) True LOC122352185
TU105258 other downstream 2578429 17235872 ~ 17255491 (-) True G71118
TU104984 other downstream 3010145 16817140 ~ 16823775 (-) True G70986
XR_006251780.1 other upstream 29199 19881824 ~ 19893315 (-) False mfsd6b
TU106614 other upstream 636539 20489164 ~ 20503890 (-) False G71938
TU106615 other upstream 636539 20489164 ~ 20503890 (-) True G71938
TU107092 other upstream 1856663 21709288 ~ 21726820 (-) True G72363
XR_006251764.1 other upstream 2318838 22171463 ~ 22223667 (-) False cerkl

Expression Profile