RNA id: TU106549


Basic Information

Item Value
RNA id TU106549
length 1370
lncRNA type read_through
GC content 0.30
exon number 3
gene id G71912
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 20163123 ~ 20630423 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaattcaggtgtttttaatacattttaacactttttattgatttatggaGAAGAAATTACAAATTTATGTACTGAAATActcattacatttcattaaaaattacttttattattattttcaactgCTACTGATATTGTCAGCCTATTGTTATTGCATTTTAGAGTTCAATCCCCAGAATTCTGCTTGAGTCCAGTTGATAGGGCGATTGTGATGAATCTGTGAGGAGATATGTTTACAACCCCAGGACTGGGAGATGCCAGATGTTTCGTTACAGCGGCTGCGGaggcaacaaaaacaactttgtcCACAAAAGACACTGCATGAAAATGTGCACGAAAGaTCACAGCCGGAGGAAGCAAATACGGATAAAGACAAAAAACTCTAATATCTTATTCCGATCTATCTAGGACAATACCAAATCCTAAACCACTATATAAAgaggaaataagaaaaaataagaaacagcaGCATATAGTACCTCTCTGGCCCAGAAACTGTTCTCATGTATATAATTATCACAGTTAATGGAATTTTAATCTGgccttcatatatatatatatatatatatatataaagacattctacatactttaaatgtaaaacataatctAACGCTCTATGTTATGTtctaaaatactaattaaattgtatcaaaatatacatataataaaatatacacacaaacacacacacacgcacacacgtatataaaatgtatctttttttttcctcttttttttatttccacagtTCCACTTATGGATCTATTTATAGCTATTTATGGTTGTTATATTTGCTGGCAATTCTAAACcctttgtctttctttcctttatttttttcaaacctaccaatttattatcattttatatatgattaatcTTTATTATATGTTGTTTATAAAGTACACTCCAAATGATgttgtcaaatgtttttatgccCTTGCACTGTGACCTTGAACTCTTGAGGAAACTTGaggcaaatgtattttttttcttcatccagGACACGGCGATTCAAAGTTGAGTCTAACATAAAAATTATAGAAAACGTGACCAGCGGATCATCGCTAAGAGCCACTTAACCCTATATGACTGCATAATTTACTAACATCTTAAATTTCCAATAAAGTACCAGCAAATCAATTGTGGAAAGTATTGTAGGACTTCTTGTTGGTTTAAAAAAGGACTCTGTTTTCTACACAAGATGGAGCTGTTACTCTTAGAAGACATGAAATCCACTACTAGTGGTTAAAACGTCTTTATATGcactcataataaaaaaaaactgtatttgaatTAATATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106568 lncRNA downstream 53011 20215420 ~ 20218047 (-) True G71919
TU106551 lncRNA downstream 102454 20163123 ~ 20168604 (-) True G71912
TU106184 lncRNA downstream 329511 19887175 ~ 19941547 (-) True G71727
TU106191 lncRNA downstream 348367 19916199 ~ 19922691 (-) True G71732
TU106145 lncRNA downstream 418471 19848339 ~ 19852587 (-) False nab1b
TU106557 lncRNA upstream 10067 20612889 ~ 20630423 (-) False G71912
XR_006251771.1 lncRNA upstream 29871 20632693 ~ 20637422 (-) True LOC122351564
TU106635 lncRNA upstream 154796 20757618 ~ 20758206 (-) True G71957
TU106663 lncRNA upstream 590243 21193065 ~ 21193278 (-) True G71981
TU106668 lncRNA upstream 603393 21206215 ~ 21206762 (-) True G71984
XM_043249235.1 mRNA downstream 526 20248988 ~ 20270532 (-) True calcrla
XM_043248317.1 mRNA downstream 241253 19997475 ~ 20029805 (-) False obsl1b
XM_043248319.1 mRNA downstream 241253 19997475 ~ 20029805 (-) False obsl1b
XM_043248318.1 mRNA downstream 241253 19997475 ~ 20029805 (-) False obsl1b
XM_043248315.1 mRNA downstream 241253 19997475 ~ 20029805 (-) True obsl1b
XM_043248671.1 mRNA upstream 91738 20694560 ~ 20718541 (-) False col5a2a
XM_043248670.1 mRNA upstream 91738 20694560 ~ 20718541 (-) True col5a2a
XM_043248707.1 mRNA upstream 126518 20729340 ~ 20731777 (-) True LOC122351555
XM_043248669.1 mRNA upstream 134201 20737023 ~ 20746870 (-) True LOC122351538
XM_043249007.1 mRNA upstream 145053 20747875 ~ 20750613 (-) True LOC122351730
XR_006251780.1 other downstream 377743 19881824 ~ 19893315 (-) False mfsd6b
TU106134 other downstream 466459 19796257 ~ 19804599 (-) False glsb
TU106113 other downstream 549321 19720498 ~ 19721737 (-) False ankar
XR_006251863.1 other downstream 1701176 18569755 ~ 18569882 (-) True LOC122352185
TU105258 other downstream 3015567 17235872 ~ 17255491 (-) True G71118
TU107092 other upstream 1106466 21709288 ~ 21726820 (-) True G72363
XR_006251764.1 other upstream 1568641 22171463 ~ 22223667 (-) False cerkl
TU107316 other upstream 1696350 22299172 ~ 22307013 (-) False LOC122351746
TU107329 other upstream 1856574 22459396 ~ 22511307 (-) False LOC122351746
TU107929 other upstream 3327385 23930207 ~ 23931329 (-) True G72930

Expression Profile