RNA id: TU106551


Basic Information

Item Value
RNA id TU106551
length 5439
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G71912
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 20163123 ~ 20630423 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCAAGGGAAAACAAACTTTATTATCTcctttttacaaaacatttcaaagtttAACCTAACCTCAGCAGTAATTTGAATCTAATATAGACCTGCAAGCAGCAAACTGTCCAACACAAAATAATTactcttacttttttttccccccaaacaGAATCATTTACAGAAGCACAGACAGGTagagggctttttttttttttttttttgctgctctaGTACAAAGAAAAACTGCATGACCAACAAAACGAATGTAATGATCCTAGATGTGCACAGTGAGAATTCATGAGTGTTAAATGTATGAGTGCAAATTAACCACATGATTTGCGTGAGAACAACATCATGTGAATATCATGAGGTCGGGCGGAGATGAAACatgagaaaaatacaaaaagccgTTTGCAATGGCGTACTGACTTTCCCACCAAACAGTGAATCATTTTCGACACGTCACTGCGGTCCTATacgaacatttatttttttattgcatttgtgaAATGATAGTCATAACagtagtaataaaaaataacaaaagcctCCCTTGGTGAAGCATTCTGCTACTGAGAAATGTCGAAGTTACGCATGCTGCTGTctgaatattaatatgcatcTGTACAGTGATCTAGAGTACAGCACGTTATGGACTAAACAgaacatcaaataaaacattccaTACATGTATCACAAGACATAGCCTTGTGTGAACATACAATCTAACTTAATGTTAACAGAGTCTAAGACACtgacacaaatattacatttcaaagcAGTGCAAAACATATGGTAAATGCGACGACAAGAAACTCAACGCTGAATCTAAAACACCAACAAAACGTGTTGAATAACGTGTCGAAAAATGAGCTACTTTAAAGCAACAGCATGACATCATTTCCGGCCATGTGCACGGATGGCTCAGCATGACCATGTGCATACCTTTACTAATCCAACATTAGAAAAGTTCTGTGCTCATAATGgacattaaatcataaaatgtcaGATTTCGGTGTGAATTAACTCTTGGGTGCATATCTGTGAATTGACTGCAGTGAAACTGCTAAACGGATACCgaatagaaatatagaaatatatatctTTACAACTTCGATGCTTTGCAAATGCATGCTTTCGTAccagattaaataaataagaatgtaTTCTTTATGAAAGCTTGTTTCCGGctatgaataaaacataaagaaaTAGTGACTTTTATATCACAATTCAGACGTTTTTCTCGCAATACAAACgagattttaaattattattttttcccccatagtgaataaacctttattttttttttcttgcaactATAAtcttatatctcataattctgtcCTGAAAATTTTTCTTCGAATGATAAGAAACCAAAActgtgagggggaaaaaaaaagtcaaaattgtcaGATCTAAATTTTATCCCGTGGTGGAAACACACTTCCATAATTTTGTTGCAAGACTGTGAAAGAATTGTTTTTCTTCCTGTGCATGATTACATATTCTCATGTAAAAAGCATGCAATTGGAAAAACGGCAAGAAGGTAAACTAGAGGTTGAATAATGAATCACGTTGAAGCGGTTACATTCAACTTTCAGCTTCGATgccacattttacacatttaaatgtggaGGATGAAATACATATTGATGGCTGACTGAAAGAGTTCCGATTTGGATAAAATGGGAACTCGACATGACCTCAGCCTGGTCGCAATCTTCAGGAGAAATTGGGAAAACGTTCAGAGCTTAATCAGAGGGGGCTTCAGCACTGGAAATAAATTGCTTAACACGACACTGACAGTTTTGCTGGGGCGAGAattgaagtgtgtaatttctgcgCGACTAGCGGCAAcaaacaaaattgcaaaaataatgacttcaaTCATTCCCCTGTCTGTTTCAATGGAAGTCAAAAGGATGAAATGCCTCAGTACACTGACTAAACAAGTTTTGTTTGGAAACAGAACAAATTGAGTGCCTTGCTGCTAATCTTTCACACGCACAGCATGGCATATTAATTTTAGAGGAAGgtaacttatttttttgtagcatctctaaatatacatttctccACAGGCATTTACAATACAACAGATGGGGTTTACGGCACTGCACATTCATTTATAAGGTCTCCAGACTTGATAAGTACTTCAATGCCATCAGGGTCTTTATATAACTGCTTTACGAGACGCATGTACCGTAAAAAGAGCAtctttgcatttatataaacatcGCATGTCAGTCAGATTTGCCGCGGATTGTTTTGTGCCGCAGAaattacacatttctttttcgTAGCTGTATGATCAgggataaaaatataattgaaggTGCAAATAGGTGGCTAAAATAACTGGAAGGAATCATTAATAGAGTGTACAGGCTGtcttaataatactaataataattaatcacagcaaaacatgcaacataaacagcttaaattcaatttttgcatgtgagaaaaatattattagagcTGATCAGTAAGGCTACATCAGCAGGAGATACACTCAAGAATCATGGgtatcagtaataataatataaacacacagcGGCTTTAACTGAAGCTAAACAACTGTTATAAAGAAACAATCATGTTTAAGAGCAGACCAGGGTACAAAATCTGCCATCACTTTTGAAAGTCTGGCCAAAACCAATGAACATTCTAGAGCCCGAGATGATCCTGACTAATCACTGAAGAGCGGACTAGGGAAATAACAAGCGCTCTGTTGTATTGGTCTGTAGCAGAAATAGGGGCACGGCAGCCGTGTCGACTGTGCGTGCGCATGTTTCAGAAGCTGTCAGTGGAGAACGACCTCTTAGTCTCGTCTGACGCATGCAGAGCCTGTGCATGACTTTTCGGTTCGACTGACAAACATGGTTTTGGAGAGCAATATGGAAAACACTGTCAGAATGAAGTGCGCTGCTGGACACGTGAGGACAGGGTCCAAAATGAACACTCGCCAGCTACCAAGGGTGAGTAAAAACTGACTTGAAATCGGATAAGTTCGAATTGTGAAACCAGGGGCCTTGGTTGTAAAGACACGCGTATAATGTTCGACATGTTCCAAAATGTACCTACGAATGAATCAACAGCGTTGAAATAACGTCTGTATTTACAaacgatttttttaaaatgagtcccACTTTAGAAACTGCAGTTCAgcatgaatttttttatgtgtaaaaacaatgaatgtatgtgtgtgtgtgtgtgaagtcaaATCTGATCGTAGGCGTTTTTTTATAAACGAGGCCCCTGAagattatcataataataatgcaaaatacagtTTGATAGCAGgtaaaaatgttcattcacAACATAGAGTAGTggcaaaaagttaattttgggCCCTTCGTGAGAGTTTACCATACTCACAGAGAGAGCGTATGGTAGAGGAGCACGGGGTGGATTTCATTATCAGCACATCTGTATTCACTTCCAGAGAAATAAAGCCACTGTATTTCTCACACTACTGCAAAAACACGTCGCATATAAAAATATCCTATAAATAATTCTGCGGTAATATATCCAATTACTTAAACTTAGATTGTGGGTTGAATTGAAATGTCCCAGCATGCAGTAAAGCTCGGAGCACGGCTCATACAGTACGTCCTCAcattgattgtttgttttcataccGATTTTGGTCTTCCTCTCAGTTCTGAAAGTGAATGCAAGAAGCTAATAATGGATTCTCGGTGTTACTCCGCATGCCACAATGACAGATGCAAACAAATCGTACAGGCGTGGTGCAAACATTCCAACTCCATCAGTCGGTTTCATTATTCATGTATGAGATGCACTGTTGTAAGGTTCCCGGTGAGCAAAGCCCTGGAGCAAAAGCACAGGACTACTGCTTTAAACTCGATCTGACCTAATGAAAGACTGAAAAATCGGAGGATTTCATTGGCTTTGCTGTACCACACCACAAAATACGGATTGAAAAACGTGAATTCACAGTGAAAGCGATGGCAAAACAGGACACCGGTGACGTGAGGTACTAGAGAGTCAAAAAAAGGTAAAGTgtctttgaaaataattataaagcaGGACCATCGGGAGCACAACAAAGGTTGAGTAGGAGGAACATCAAACTGAGATTTGAAATATGTGCACattatagaatataaattaGTCAGAATTACTGAAAATACAGGACAGCAAAAGtacagagagaaaacaaactAGGTGCAATGCCATTGGTTCAAGGGTCATGTGATGCAGTGAAGGATCATGGGTAGAAATTAGAGAGTGCCCATTCCAGTGACCTCAGACGTCAGCCTAGAATAGTTAAGGGAAGAGGAAAAGGGGGTGGGGTAAGgaaaagatagaaaaaatagataacataaaataattctgaaagCATTTGACACTTCTGTACAAAAATGATAGCTTTTTCCGCCTTGTTGCTCTCCGCGTCGAGTAATAAGCATGCATTACCGTCGATTCGGCTAAGCTGAAAACAATCAAGCtcttaacaaatgcaaaaataaaatctcttcCGCTTCTAAAGAAACACAGTTTCCAGCATTTCCCCGATTCTGACATGCGTTTGTTCTTCGTTACAACATCTGCATCACATCACTAGCTCCTTGCCAACAGCATTGCTAGAAAATGCTATTGGGTTCAAACTACAAGACTTATGCAGCAACCGTACTGAACTAATCTAAcaaatttaaagaataaataaatatgtaacaagATCCAAGCATTCGGCATGCTAAAATACTACACTAAAACACTGCATAACATGAACAAATCATACTACAGTTgacctgcttttctttttaaggtttttttttttttttttaagtcagtaGTCTGCCTACATGATCGTAGCTACTGATGAAGCTGACCATGGGGTTTAAGGGAAAGGTTGGTGACCTCTAAGGGAAgattgtatacataatatatatatatataatgttttttaggAATCAGCTGCTGATAGCTTCAGATAATGAAAGCAGTTTGGGGCTTCAGGATGTAGTCATTGATGAGGGGTCATTCCACATGGCGGCCACGTCTCTGAACCTGCCATCAGAACCGTGGGAAAGCAATATGCATTAGTTTGGCCCCGGCCGCTACCCTGCAAGCCTCAACATCACACACAAGAATAGATTTAATGGGCCTGTGGCTAAACATCTCGGATTCCCCGAACACACAATGTGAAGATCCTATCTGAGCTGCTTTTAGGGAACTGTTTTGAGTTAGAACACCAGAAAAATGTTTGGAAACACTTTTGTGAAATGTTGACAGGCTCACCTTGCGTTGATGAGGTACTGGGCAAGGCTGATGTTGGCGGGGGTTCCTGTAATGGTTATCTGGCGCTCTGATGACCCTTCCATGGCATTAGCTATTTTGATCTGCGCTCCAGACATCTGACGGATCTCGTTGATTTTGGTTCCCTGGCGCCCGATTATGCAGCCTATTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106184 lncRNA downstream 221576 19887175 ~ 19941547 (-) True G71727
TU106191 lncRNA downstream 240432 19916199 ~ 19922691 (-) True G71732
TU106145 lncRNA downstream 310536 19848339 ~ 19852587 (-) False nab1b
TU106138 lncRNA downstream 353000 19807866 ~ 19810123 (-) False glsb
TU106135 lncRNA downstream 356036 19799612 ~ 19807087 (-) True glsb
TU106568 lncRNA upstream 46816 20215420 ~ 20218047 (-) True G71919
TU106549 lncRNA upstream 102454 20271058 ~ 20602822 (-) False G71912
XR_006251770.1 lncRNA upstream 128326 20296930 ~ 20302428 (-) True LOC122351563
TU106560 lncRNA upstream 128595 20297199 ~ 20302436 (-) False LOC122351563
TU106577 lncRNA upstream 210048 20378652 ~ 20389699 (-) True G71924
XM_043248317.1 mRNA downstream 133318 19997475 ~ 20029805 (-) False obsl1b
XM_043248319.1 mRNA downstream 133318 19997475 ~ 20029805 (-) False obsl1b
XM_043248318.1 mRNA downstream 133318 19997475 ~ 20029805 (-) False obsl1b
XM_043248315.1 mRNA downstream 133318 19997475 ~ 20029805 (-) True obsl1b
XM_043248320.1 mRNA downstream 133319 19997475 ~ 20029804 (-) False obsl1b
XM_043249235.1 mRNA upstream 80384 20248988 ~ 20270532 (-) True calcrla
XM_043248701.1 mRNA upstream 102616 20271220 ~ 20295378 (-) False tfpia
XM_043248699.1 mRNA upstream 102616 20271220 ~ 20295378 (-) True tfpia
XM_043248700.1 mRNA upstream 102616 20271220 ~ 20295376 (-) False tfpia
XM_043248702.1 mRNA upstream 104189 20272793 ~ 20295378 (-) False tfpia
XR_006251780.1 other downstream 269808 19881824 ~ 19893315 (-) False mfsd6b
TU106134 other downstream 358524 19796257 ~ 19804599 (-) False glsb
TU106113 other downstream 441386 19720498 ~ 19721737 (-) False ankar
XR_006251863.1 other downstream 1593241 18569755 ~ 18569882 (-) True LOC122352185
TU105258 other downstream 2907632 17235872 ~ 17255491 (-) True G71118
TU106614 other upstream 320560 20489164 ~ 20503890 (-) False G71938
TU106615 other upstream 320560 20489164 ~ 20503890 (-) True G71938
TU107092 other upstream 1540684 21709288 ~ 21726820 (-) True G72363
XR_006251764.1 other upstream 2002859 22171463 ~ 22223667 (-) False cerkl
TU107316 other upstream 2130568 22299172 ~ 22307013 (-) False LOC122351746

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU65735 True 6199 lncRNA 0.37 2 CI01000009 12305639 ~ 12372174 (+)