RNA id: TU106615


Basic Information

Item Value
RNA id TU106615
length 1823
RNA type TUCP
GC content 0.43
exon number 7
gene id G71938
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 20489164 ~ 20503890 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCTTGCCAAGATGATCAGCCACATCTTCGACATGAGCGACGAGGATCCGCACAGGAGGAGGAAATACGCAAGTATAGCGCCATATATGGGAGATTCGACTCAAAAAGGAAGGATGGAAAGCATCTGACTCTGCATGAGCTGACAGTGAATGAGGCTGCGGCACAGCTCTGTATGAAGGAGGTGGCCTTGCTGACTCGCAGAGATGAGCTTTTTCGGACTGGCCCGTCAGGTTTCCCTGAGAGGTCACGTACAAATACACCTACAGAACCAGCAAATCTCGATGCGGTGACAGAGATGAGCCGTCGCCCAAGAGAATTAAAACCGAGGAGGGCTGTTTTGACCTCCAGGAGGCGCTGCAGGCCATTCACATGCGCCAGGAGACCTTTAGGAGCAGCTAGCCCACGCCAGATCTAAAGGAGAGGAGACGGTTGGGCGGAACATCCAGGTTCAGCTGGAGCGTCTGTTGGCCAAGCAGATGGAGATACTGCATGACGCTGCGGCGCAGGATAGACTGCAGGCTCTAGAGTGGAGGGTTCCACCGGGGCCCTACAAACACAGCACAGACAGGCAGAACAGCAACGGGCTCTCTGCCGACAAAAACACTGACCAGCAGGGAGAGAGGCCGCTGAATCTGAGGGTGACCAGCCAGAGGACGAGTGCTTCTGACGGAGACACAACTCTTGGAAAGCAGCTGGCCAATGAGTTAAAGAGGCATCATCACGCTAATGCAGAGAGCAAGACGTCAGCAGCTACAGAAAACGGAGGAGATGCATCTTCACGTGCCCTCAACCTCTCTGAAAAGAAGACCATCAAATCGGAGCCGGAGGATTCCAGATAGCAGCCCCGAATGCTTTCGTCTCAAACCTACAACAATACACGTCGTCTGTCAGTGAATACTAAACAAGCACAACTACAGTAGAGCCTTAACAACCAATGTTGCCTCAAAATagagtttattttagtttctcgccatttttgtttttgccaaagCACCTAGAGCCCTTATTTTCATCCTCCTGAGTAAATTCACACTGTTTGTGCTGTCACTGACTGTACTAGTTTAATTCTCGCTAGCTCTCATCACTTGTTTTTATGCTCTCCTATCGGTGTGGACCGCAAAGTCCGATATTTGTACATACATGGAAAATGTCTGTTTGAAAAtggttaaatgttatttaaatacagtatgtgttgtatgtatatatgaatgcatgtaaaatatCACTGAAACGGAGGgatgcagtgtttttaaagttgttAGTAAGCAGCTGTCGCCTATTTAAGTGAGCCTCCCGGATTGAGCTTCTCCTTAAAGACCCCATGCAATCGTTTTCATTTCCTGTATTTCCTATTATCAAATGacattttgcccttttttttaaagagccgGTAGGCTTTATTTACACCATaaacagtaatttgttactttCTATTGCTACTTAATAGCTGGTGGTATTGTTAACAGGAGCAATGTTATAATTCTAGAGAGCATTgtattcaacaaaaacattaggGCTGCGCCatgtatcaaaatattataGATATTATGTACGGCTAAATGCATCAAATCAACAAGGCTGTTATTTTTAGAGTGAACTCATTTGCacaagtaaatgtaaattaagacgtaaatattagtattgtatTTCTACAGTATTTAAAGgggtattttattaaatactctctttaattaataataaataagtattaTTGCAACATTTCGTATTTTAAGTGCAGTTATTAGGCCTGGGCAACGATTAATTGCacccaaaatatataaatagaaatgatatgaatataattatataaatgtaaatcttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251769.1 lncRNA downstream 54195 20434116 ~ 20434969 (-) True LOC122351562
TU106577 lncRNA downstream 99465 20378652 ~ 20389699 (-) True G71924
TU106560 lncRNA downstream 186728 20297199 ~ 20302436 (-) False LOC122351563
XR_006251770.1 lncRNA downstream 186736 20296930 ~ 20302428 (-) True LOC122351563
TU106568 lncRNA downstream 271117 20215420 ~ 20218047 (-) True G71919
TU106617 lncRNA upstream 378 20504268 ~ 20508659 (-) True G71940
TU106618 lncRNA upstream 436 20504326 ~ 20508702 (-) False G71940
XR_006251768.1 lncRNA upstream 98094 20601984 ~ 20602557 (-) True LOC122351561
TU106557 lncRNA upstream 108999 20612889 ~ 20630423 (-) False G71912
XR_006251771.1 lncRNA upstream 128803 20632693 ~ 20637422 (-) True LOC122351564
XM_043248677.1 mRNA downstream 11431 20453526 ~ 20477733 (-) False LOC122351543
XM_043248676.1 mRNA downstream 11432 20448105 ~ 20477732 (-) False LOC122351543
XM_043248675.1 mRNA downstream 11432 20448105 ~ 20477732 (-) False LOC122351543
XM_043248679.1 mRNA downstream 11432 20451210 ~ 20477732 (-) True LOC122351543
XM_043248680.1 mRNA downstream 26699 20448104 ~ 20462465 (-) False LOC122351543
XM_043248671.1 mRNA upstream 190670 20694560 ~ 20718541 (-) False col5a2a
XM_043248670.1 mRNA upstream 190670 20694560 ~ 20718541 (-) True col5a2a
XM_043248707.1 mRNA upstream 225450 20729340 ~ 20731777 (-) True LOC122351555
XM_043248669.1 mRNA upstream 233133 20737023 ~ 20746870 (-) True LOC122351538
XM_043249007.1 mRNA upstream 243985 20747875 ~ 20750613 (-) True LOC122351730
XR_006251780.1 other downstream 595849 19881824 ~ 19893315 (-) False mfsd6b
TU106134 other downstream 684565 19796257 ~ 19804599 (-) False glsb
TU106113 other downstream 767427 19720498 ~ 19721737 (-) False ankar
XR_006251863.1 other downstream 1919282 18569755 ~ 18569882 (-) True LOC122352185
TU105258 other downstream 3233673 17235872 ~ 17255491 (-) True G71118
TU107092 other upstream 1205398 21709288 ~ 21726820 (-) True G72363
XR_006251764.1 other upstream 1667573 22171463 ~ 22223667 (-) False cerkl
TU107316 other upstream 1795282 22299172 ~ 22307013 (-) False LOC122351746
TU107329 other upstream 1955506 22459396 ~ 22511307 (-) False LOC122351746
TU107929 other upstream 3426317 23930207 ~ 23931329 (-) True G72930

Expression Profile