RNA id: TU106617


Basic Information

Item Value
RNA id TU106617
length 459
lncRNA type inter_gene
GC content 0.55
exon number 2
gene id G71940
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 20504268 ~ 20508702 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGAGCTGAAGGAGCGTCGCTTACCCGCCGAACGCGCGGCACCTCGCTGGACGTCAGGTGAAGCGTCGCGTAAATCAACGGAGCGTCACATTTCAGAACTTTAACAATCAAACAAGCAGACGGCGCTTTTGGAAGAGTTTTGGTgggaaaagacaaagaaagaaaaccaaaagGTATGGCAGCGACTTTACCCAGAACCCTTGGGGAGTTGCAGCTCTACCGCATCCTTCAGAGGGCCAACCTGCTGTGCTACTACGACGCCTTTATCCAGCAGGGCGGCGATGACGTTCAGCAGCTCTGCGAGGCTGGCGAGGACGAGTTTCTCGAGATCATGGCTCTGTAGGCATGGCAAGCAAGCCGTTGCACGTCAGACGCCTACAGAAAGCTCTGCGAGATTGGGTCACAAACCCTGCCCTGTTCAATCAGCCCCTCACGTCTCTTCCTGTCTGCAGCATTCCC

Function

GO:

id name namespace
GO:0005770 late endosome cellular_component
GO:0044440 obsolete endosomal part cellular_component
GO:0031902 late endosome membrane cellular_component
GO:0010008 endosome membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251769.1 lncRNA downstream 69299 20434116 ~ 20434969 (-) True LOC122351562
TU106577 lncRNA downstream 114569 20378652 ~ 20389699 (-) True G71924
TU106560 lncRNA downstream 201832 20297199 ~ 20302436 (-) False LOC122351563
XR_006251770.1 lncRNA downstream 201840 20296930 ~ 20302428 (-) True LOC122351563
TU106568 lncRNA downstream 286221 20215420 ~ 20218047 (-) True G71919
XR_006251768.1 lncRNA upstream 93325 20601984 ~ 20602557 (-) True LOC122351561
TU106557 lncRNA upstream 104230 20612889 ~ 20630423 (-) False G71912
XR_006251771.1 lncRNA upstream 124034 20632693 ~ 20637422 (-) True LOC122351564
TU106635 lncRNA upstream 248959 20757618 ~ 20758206 (-) True G71957
TU106663 lncRNA upstream 684406 21193065 ~ 21193278 (-) True G71981
XM_043248677.1 mRNA downstream 26535 20453526 ~ 20477733 (-) False LOC122351543
XM_043248676.1 mRNA downstream 26536 20448105 ~ 20477732 (-) False LOC122351543
XM_043248675.1 mRNA downstream 26536 20448105 ~ 20477732 (-) False LOC122351543
XM_043248679.1 mRNA downstream 26536 20451210 ~ 20477732 (-) True LOC122351543
XM_043248681.1 mRNA downstream 39495 20448104 ~ 20464773 (-) False LOC122351543
XM_043248671.1 mRNA upstream 185901 20694560 ~ 20718541 (-) False col5a2a
XM_043248670.1 mRNA upstream 185901 20694560 ~ 20718541 (-) True col5a2a
XM_043248707.1 mRNA upstream 220681 20729340 ~ 20731777 (-) True LOC122351555
XM_043248669.1 mRNA upstream 228364 20737023 ~ 20746870 (-) True LOC122351538
XM_043249007.1 mRNA upstream 239216 20747875 ~ 20750613 (-) True LOC122351730
TU106614 other downstream 378 20489164 ~ 20503890 (-) False G71938
TU106615 other downstream 378 20489164 ~ 20503890 (-) True G71938
XR_006251780.1 other downstream 610953 19881824 ~ 19893315 (-) False mfsd6b
TU106134 other downstream 699669 19796257 ~ 19804599 (-) False glsb
TU106113 other downstream 782531 19720498 ~ 19721737 (-) False ankar
TU107092 other upstream 1200629 21709288 ~ 21726820 (-) True G72363
XR_006251764.1 other upstream 1662804 22171463 ~ 22223667 (-) False cerkl
TU107316 other upstream 1790513 22299172 ~ 22307013 (-) False LOC122351746
TU107329 other upstream 1950737 22459396 ~ 22511307 (-) False LOC122351746
TU107929 other upstream 3421548 23930207 ~ 23931329 (-) True G72930

Expression Profile