RNA id: XR_006251774.1


Basic Information

Item Value
RNA id XR_006251774.1
length 1665
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id LOC122351567
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 21233186 ~ 21245785 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgtccagaagacaatcattggaggtctCGCTCTCGACATCCTATCTGTCCCCTCTGAGCCTAATCCCAGGCCGTACGCTGTGGGCGACTCGAGTGATTTCTGCAAGCTTATGGGAAACCGGTCTTTCAAACATGGATCTGCCATTCAGCAGGGCTCTCCAAGGATTCATCAAAGTCGGGATGTTTCCTCAAACGGCTGCTGTCTGTATAGCGAGTAGATAGCAAGCAGCTCGGGaagttttggaacagagccacgGAGAGCCTTTGGGACGGATGAGCTctcaaagtaaataaatggcGAGATACAAAATGTGATTGTTGGTTTTCATCCAGTGAACTGTTCTCTGGGGTTCCCAGAGCCAACAGAAACTGATCGACATGCTCCTGGTGTGGTGGATCCATCCTAGTCTTTGTCCGTCCGGTGTATATCTGATACATTTTGCTCACAAAAGTACTTTCTCCAGTTTGTTGGAGGATTTTTCACTAttgttgctgttttactgtTAGTTGAGACTATGCTgttattagatttaattatgtGTAATATGATTTATCGCATATAAATCACACAGGGTCAAAACTGCATCGCTGCAGTGTGTGCATATGCCGACGTGTCACATCCAAACTCGTGAGAGAACCTCGTATTTCACAAGGTAGCAATTTTTCTACGACTTCTTAAGATGTGATTCatatgaacacttttttttataaaaataaggtCCATTGCTAATTTAACCATTAGTCGGGGTTATTCAAAGTGTactaaatttgtgtttttagaaCTTTGACAAATATTCTGGTTCAAGTTCTCTCAACGTTCTTCCAGCAACGGTAATAGAATGCTATGTTATTACACATAGTtcatggaatgttttttttcatccccAAATCATTTGCcttatttcagaatattcaaaaaaacattcaaaagcaacaaatttcacacaaaaaactaataaaaaaatatattttttgctctaTAGCCaccatttcattaaaacaatacaatacatcatacaaaaaaaatcagtgtttaAGTCACATTTATAAGTCATAAGTAAACACTGAATGTACTATAAAGATGAACTTCATTCTTTTAACTCAAAATCTAGATCTGTGAGGTTAGACACGGCCCAAGATTTAGTtcacaaagcatttatttatttttttcatgactGACCTGTTGAGATGTTCCACACACCATTTAACATCACAGCGTCTGAAAGAGGTGCCGCTGGATGCGTGATGCTGAGAGGCAGACAGCTAATGCTGGTCTGTCATTTACATCTGACAAAGCTGTGTTTGAGAAGTGGGAGATCTGACAATTTTCATAACCCCTGCAACCTTGTGTTTGTATAAATTGAATAGTGGGCAGTTGGACCAGAGGGGACGCAGCTGCTACCTGAACAGAATAGCAATGCTTATTTAGAAGTCTGCCACCACTCTGTGGACGACCGCAGCGCTTCCCTTCTTTCTAAATGAACGGGGGATGTGATGAAGTGAAGCAGCAGGAGGTGAAACTGTGGGAAGAACAGGCCGACGTTTAgcagacattttaattaaattcaggaAACGGCAGCGTTTTGAACACGCTGTATCAACGTTTTTATGCATAATATCTGCAGCGCATGAGAACAAAATGCTACCTGGTTTATTAAACATCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106668 lncRNA downstream 26424 21206215 ~ 21206762 (-) True G71984
TU106663 lncRNA downstream 39908 21193065 ~ 21193278 (-) True G71981
TU106635 lncRNA downstream 474980 20757618 ~ 20758206 (-) True G71957
XR_006251771.1 lncRNA downstream 595764 20632693 ~ 20637422 (-) True LOC122351564
TU106557 lncRNA downstream 602763 20612889 ~ 20630423 (-) False G71912
TU106713 lncRNA upstream 183366 21429128 ~ 21430341 (-) True G72024
TU106716 lncRNA upstream 188095 21433857 ~ 21436278 (-) True G72026
TU106978 lncRNA upstream 362032 21607794 ~ 21615684 (-) True G72260
TU106979 lncRNA upstream 362032 21607794 ~ 21615684 (-) False G72260
TU106983 lncRNA upstream 362032 21607794 ~ 21615684 (-) False G72260
XM_043249014.1 mRNA downstream 62411 21168939 ~ 21170775 (-) True LOC122351741
XM_043249011.1 mRNA downstream 462033 20769745 ~ 20771153 (-) True LOC122351738
XM_043249010.1 mRNA downstream 472159 20760046 ~ 20761027 (-) True LOC122351733
XM_043249009.1 mRNA downstream 476073 20755896 ~ 20757113 (-) True LOC122351732
XM_043248709.1 mRNA downstream 480206 20751269 ~ 20752980 (-) True LOC122351558
XM_043248710.1 mRNA upstream 498281 21744043 ~ 21896047 (-) True LOC122351560
XM_043249016.1 mRNA upstream 651423 21897185 ~ 21907713 (-) True LOC122351744
XM_043248643.1 mRNA upstream 925701 22171463 ~ 22223666 (-) True cerkl
XM_043248644.1 mRNA upstream 979796 22225558 ~ 22228499 (-) True neurod1
XM_043249520.1 mRNA upstream 1095646 22341408 ~ 22398653 (-) True LOC122352034
TU106614 other downstream 729296 20489164 ~ 20503890 (-) False G71938
TU106615 other downstream 729296 20489164 ~ 20503890 (-) True G71938
XR_006251780.1 other downstream 1339871 19881824 ~ 19893315 (-) False mfsd6b
TU106134 other downstream 1428587 19796257 ~ 19804599 (-) False glsb
TU106113 other downstream 1511449 19720498 ~ 19721737 (-) False ankar
TU107092 other upstream 463526 21709288 ~ 21726820 (-) True G72363
XR_006251764.1 other upstream 925701 22171463 ~ 22223667 (-) False cerkl
TU107316 other upstream 1053410 22299172 ~ 22307013 (-) False LOC122351746
TU107329 other upstream 1213634 22459396 ~ 22511307 (-) False LOC122351746
TU107929 other upstream 2684445 23930207 ~ 23931329 (-) True G72930

Expression Profile