RNA id: TU107104


Basic Information

Item Value
RNA id TU107104
length 535
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G72372
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 21732308 ~ 21732996 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATTGCATCTGTGCAATCACAGGGGCTGAATCAGTGGTCTGCTAACACCAAACCTATTGACTGCAGAAACACGGAAACTGATACTCATTTGTCTTGATCAGTTTGGTGGCAGTGTATGTGCTCGCCAAGCACTCATCTGTAACAAGTGTCCATGAAATTTTAGATGTTTCCCGCTTCTCAATAATGTAATGAGTGACCTCAGAACAACCATCATTCTCAGGTGGATTCCATGAAAGTGTTACTTTGCCCTCAGAGATATCTGAAAATGTGATTGGTCCAACTGGTTCACCAGGATTTATGGCCTCCACACTATAAACACCGCGATGACTACGGTCAGCATCTCTGATAAAGAGGGTACTTGATCCAGAAATTGTTGTAATATCAACCATTTTCTTGGTTAACTCAGTATTATCTCTGTACCAGGTAACTTTTGGTGTTGGTCTTCCTCTGATTGTCACTTTTAGCCTAATGTTTTCTCCAGCTTTAATAGAGACTCCCTCAAAGTATTCCTGTCCAAACTCAATGTTTGGAGAAA

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0042692 muscle cell differentiation biological_process
GO:0031497 chromatin assembly biological_process
GO:0048468 cell development biological_process
GO:0006323 DNA packaging biological_process
GO:0006325 chromatin organization biological_process
GO:0022607 cellular component assembly biological_process
GO:0006333 chromatin assembly or disassembly biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0006334 nucleosome assembly biological_process
GO:0071824 protein-DNA complex subunit organization biological_process
GO:0065004 protein-DNA complex assembly biological_process
GO:0034728 nucleosome organization biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0030154 cell differentiation biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0014866 skeletal myofibril assembly biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0071103 DNA conformation change biological_process
GO:0006996 organelle organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0070925 organelle assembly biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0016043 cellular component organization biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106978 lncRNA downstream 116624 21607794 ~ 21615684 (-) True G72260
TU106979 lncRNA downstream 116624 21607794 ~ 21615684 (-) False G72260
TU106983 lncRNA downstream 116624 21607794 ~ 21615684 (-) False G72260
TU106984 lncRNA downstream 116624 21607794 ~ 21615684 (-) False G72260
TU106716 lncRNA downstream 296030 21433857 ~ 21436278 (-) True G72026
TU107110 lncRNA upstream 3445 21736441 ~ 21737522 (-) True G72377
TU107242 lncRNA upstream 174003 21906999 ~ 21907385 (-) True G72474
TU107247 lncRNA upstream 209571 21942567 ~ 21942990 (-) True G72479
TU107240 lncRNA upstream 262939 21995935 ~ 22055031 (-) False G72472
TU107238 lncRNA upstream 298141 22031137 ~ 22055031 (-) False G72472
XM_043249014.1 mRNA downstream 561533 21168939 ~ 21170775 (-) True LOC122351741
XM_043249011.1 mRNA downstream 961155 20769745 ~ 20771153 (-) True LOC122351738
XM_043249010.1 mRNA downstream 971281 20760046 ~ 20761027 (-) True LOC122351733
XM_043249009.1 mRNA downstream 975195 20755896 ~ 20757113 (-) True LOC122351732
XM_043248709.1 mRNA downstream 979328 20751269 ~ 20752980 (-) True LOC122351558
XM_043248710.1 mRNA upstream 11047 21744043 ~ 21896047 (-) True LOC122351560
XM_043249016.1 mRNA upstream 164189 21897185 ~ 21907713 (-) True LOC122351744
XM_043248643.1 mRNA upstream 438467 22171463 ~ 22223666 (-) True cerkl
XM_043248644.1 mRNA upstream 492562 22225558 ~ 22228499 (-) True neurod1
XM_043249520.1 mRNA upstream 608412 22341408 ~ 22398653 (-) True LOC122352034
TU107092 other downstream 5488 21709288 ~ 21726820 (-) True G72363
TU106614 other downstream 1228418 20489164 ~ 20503890 (-) False G71938
TU106615 other downstream 1228418 20489164 ~ 20503890 (-) True G71938
XR_006251780.1 other downstream 1838993 19881824 ~ 19893315 (-) False mfsd6b
TU106134 other downstream 1927709 19796257 ~ 19804599 (-) False glsb
XR_006251764.1 other upstream 438467 22171463 ~ 22223667 (-) False cerkl
TU107316 other upstream 566176 22299172 ~ 22307013 (-) False LOC122351746
TU107329 other upstream 726400 22459396 ~ 22511307 (-) False LOC122351746
TU107929 other upstream 2197211 23930207 ~ 23931329 (-) True G72930
TU107931 other upstream 2223223 23956219 ~ 23960325 (-) False grb14

Expression Profile