RNA id: TU107317


Basic Information

Item Value
RNA id TU107317
length 1554
lncRNA type sense_over
GC content 0.35
exon number 3
gene id LOC122351746
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 22297007 ~ 22511307 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ccCAAAAAAGTGTTGTGTTCCTTTAAGCAGCTAACACTTTGCACCACAATTAGTTTCAGAAGTTTATTCTTGATACGGTCATGCTTACCGGCTCTCTGCGGCACACTAGGACAGAAAGGCTGGAATATTTTACTTCATTCTGGCATGAAATATCTCTGTGGACTTATGAATGTTATTCCCTCCAATTTCCAGAACAAtccataaaaaacatttttttaattgtagcaTGACATGTATAAGTatgtgcaggtgtaaaagtttaGTATAACATGCCGCTTATTAAATAATGAGccgtttttttaatagttgagGTGCGTCCTCAGTGGGGCGTGATTTCATTTTAACGAACCACATTCTCTAATTGAATAAAACTGTTTCCCTTTAAATCCATACAGTGTTATAGTACATAGAGGtgtctaaataaatgttacatacaTTGGCTGTGTTTGGATGGAATACTAGCTTACTACTCACTGAATACTGTGCAGTATATACTGTGAAACAGAATGCATTACGTAACAGTTTAAAGGAACATGCTTCGTTTAGTGTTTATAAATTCGAATATCGCATTTGATTCTTGATACACTGGAAATGAAGGGGTTAAATCAAGCAATCTGGCAAATGCGTAAATCGTTTGGGTATTCTGTGTATCCTGTGCCCTGTATGCATACTGTATACTGAGAAAAAGCAAATGCATTACGTAACAGTTTAAAGGAACATGCTTCGTTTAGTGTTTATAAATTCCGAATATCGCATTTGATTCTTGATACACTGGAAATGAAGGGGTTAAATCAAGCAATCTGGCAAATGCGGTAAATCGTTTGGGTATTCTGTGTATCCTGTGCCCTGTATGCATACTGTATACTGAGAAAAACGGTAATAGTATGCTTTTCTGAACGCAGCCATTGTGCATTACACTGTTCTTCAGAATTTCAGAACGTCCATGAGGTACTAAACATGTGCTACCAAATCACTGTATCATGTTTTATAACTTTATGTGAAAAtactgatcaaaaaaaaaatttttttttgcattatatatgacATAAACCAGCCAAAACaagatttttgtcatttgtatctCTTTTAAGGTCTGATGTAACGCGGCTGCCTTCACCCTCacatgcattttgaaaagcACATTCGAGCTCAGGGTCTGTTAAATTGTAGAAAGTaagtttattaaacaaaaaggcTTCAAAAAACAGAATACTGCATTTCATTTATCAGTCAGGGATGACAGAAGCACACCTCGAAATCAGCTTCTCCTTTCAGGTGAAATGTATCTAAAGAATTGTTTAATTTCAAGGATTAATCTcgtgaagggggaaaaaaaacttgtcTCAAGAGCCATAttcattttttgcattgatACCATTTTCATTACAGTGGAACATGTTTAAGCACAATTAAACAGGCTTAGAAACAGAAACTTAGAAATGTCAAGatgtgtttttcactttttcatctCTGCACTCACTTTTTCTTAAAAAGGGGATTTTCATTGTAATGAACCAACCAAaacaagaataataataataaaaaacaataaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107272 lncRNA downstream 1939 22286774 ~ 22295068 (-) True G72502
TU107268 lncRNA downstream 173599 22123190 ~ 22123408 (-) True G72500
TU107261 lncRNA downstream 196769 22100026 ~ 22100238 (-) True G72493
TU107239 lncRNA downstream 240172 22054014 ~ 22056835 (-) True G72472
TU107240 lncRNA downstream 241976 21995935 ~ 22055031 (-) False G72472
TU107400 lncRNA upstream 134308 22579803 ~ 22580772 (-) True G72583
XR_006251847.1 lncRNA upstream 140249 22585744 ~ 22588251 (-) True LOC122352087
TU107436 lncRNA upstream 207007 22652502 ~ 22653575 (-) True G72605
TU107432 lncRNA upstream 212822 22658317 ~ 22658828 (-) True G72603
TU107440 lncRNA upstream 221402 22666897 ~ 22667111 (-) True G72608
XM_043248644.1 mRNA downstream 68508 22225558 ~ 22228499 (-) True neurod1
XM_043248643.1 mRNA downstream 73341 22171463 ~ 22223666 (-) True cerkl
XM_043249016.1 mRNA downstream 389294 21897185 ~ 21907713 (-) True LOC122351744
XM_043248710.1 mRNA downstream 400960 21744043 ~ 21896047 (-) True LOC122351560
XM_043249014.1 mRNA downstream 1126232 21168939 ~ 21170775 (-) True LOC122351741
XM_043249018.1 mRNA upstream 898 22446393 ~ 22510524 (-) True LOC122351746
XM_043249180.1 mRNA upstream 36731 22482226 ~ 22484709 (-) True LOC122351832
XM_043249423.1 mRNA upstream 92480 22537975 ~ 22541710 (-) True dusp19a
XM_043249029.1 mRNA upstream 152333 22597828 ~ 22610069 (-) True dnajc10
XM_043249030.1 mRNA upstream 165863 22611358 ~ 22615781 (-) True LOC122351760
XR_006251764.1 other downstream 73340 22171463 ~ 22223667 (-) False cerkl
TU107092 other downstream 570187 21709288 ~ 21726820 (-) True G72363
TU106614 other downstream 1793117 20489164 ~ 20503890 (-) False G71938
TU106615 other downstream 1793117 20489164 ~ 20503890 (-) True G71938
XR_006251780.1 other downstream 2403692 19881824 ~ 19893315 (-) False mfsd6b
TU107329 other upstream 13901 22459396 ~ 22511307 (-) False LOC122351746
TU107929 other upstream 1484712 23930207 ~ 23931329 (-) True G72930
TU107931 other upstream 1510724 23956219 ~ 23960325 (-) False grb14
TU108001 other upstream 1775027 24220522 ~ 24280708 (-) False G72978
TU108002 other upstream 1785740 24231235 ~ 24280708 (-) False G72978

Expression Profile