RNA id: TU107329


Basic Information

Item Value
RNA id TU107329
length 1607
RNA type TUCP
GC content 0.52
exon number 7
gene id LOC122351746
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 22297007 ~ 22511307 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTACATTGTAGAGTGTAATCCAATAGACCGGTAACCCCGAAGAAGGGATCATTAGGATTCAGTCTATTCATGCCGTGGATGCTCAGTAGGCAGGAGATGATGTGCCCTTCCCCCTAATGAATGAAAATCAGCTGTGCCTGGCTGCAACAGCAccaaaaaatatctttcttatttacaaaaaaaagcgaGATATAGGGGTGCTGCTATATTAGGGAAGgtgcttttgattttattcaccTCCGAAACGCTTCAGTCTCTCTGAGTGTGTGCCTGCCTAATCAGCCCTTTTGTACTTCACAAACAATCATGAAATTTTTATCAGCACGCTGCTTCTTGCAGCTGCGCTGGAATGAGGGATTAGAGCGCGCTGAAACTAGGCTGCCGGGCGCGAGACAAGCGCAGGACGATAGCGCGCAggttaatttcattaaaacgcCAACTCGGGACCAGGAGATGCCGCCGGGGGAGCTTATCGCTCAGCTGGCCAACGGTAGGCAAGGCGAGCTAAAACACCAGGGCTCCGCGATGGCTTCTTCTGTCGGGGGAAGGCAGGTGAATCTCGGCcggatgatgatggtgatgatgatgctgTAGAGGATGTGAGGAGACGGtcctctcttcttctccctGGTGCGGAAGAGGAGGGGGAAAGCGCTGCTCTCTGCCTGCGCGCCGTTCCCGTTTCCAGCCAACGGATTCCTTCGACACAGcgtTCCCTCAGTGCGTAGCGGAGAGACAGGTCTGCGCGCTGACACTCACTCCAGCGGGCTGATGCGCTCTGGAGCTGCGAGCAGGACCCTCTGGGAGACGTTTGTCGCTCAAACTGCCGGAGATGCTTTGAAGACCCGGATCTCTGTGCTACACGTGTTGAATCGCATACCTGCGTATCCCTCTGCATCTTAGATCACTCCAAACACTCGCGCGTTCGTGCACACCATGGATGCTCTGGCCAACGACACGGACGGGCTGGAGAACTCCTTGAAGTACTCCAAGTGCGACCAGACGGAGAAGATGTGGATTAGGCTGAAAGGAATGCAGAAGTACAAAAGCACATCTCAAAGATTGAGATGTCTGGTGAAGCAGCTGGATAAGGGGGAGGTGAACGTCGTAGATCTGAGGAAAAACATCGAATATGCCGCGTCGGTTCTGGAAGCAGTGTACATTGACGAAACTAGGCGGCTTCTGGACACAGAGGATGAGCTCAGTGATATCCAGGCAGACTCTGTGCCCATGGAGGTGCGAGATTGGCTGGCCTCCACCTTCACCAGGAAGATGGGAGTGGTGCGCAGACGGCCGGAAGAAAAGCCCCGGTTCCGCAGCATCGTTCACGCCGTTCAGGCTGGGATCTTTGTTGAACGaatGTACAGAAGAACATCCAACATGGCAGGGTTGACCTATCCACCATCTGTGATTACTGCTCTAAAGGATGTTGATAAATGGTCATTTGACGTCTTCACGCTTCAAGAGGCGAGTAGTGAACACGCTCTGAAGTTCCTGGTGTATGAACTTCTCACCAGATATGACCTGATCAGCCGCTTCAGGGTACGAGAAACTGTGAAAAGCAGACACACATCCAAGACTGCgatattaaatgcattgcttACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107338 lncRNA downstream 638 22311078 ~ 22458758 (-) True G72535
TU107317 lncRNA downstream 13901 22297007 ~ 22445495 (-) False LOC122351746
TU107333 lncRNA downstream 13901 22297050 ~ 22445495 (-) False LOC122351746
TU107340 lncRNA downstream 148918 22307182 ~ 22310478 (-) True G72537
TU107272 lncRNA downstream 164328 22286774 ~ 22295068 (-) True G72502
TU107400 lncRNA upstream 68496 22579803 ~ 22580772 (-) True G72583
XR_006251847.1 lncRNA upstream 74437 22585744 ~ 22588251 (-) True LOC122352087
TU107436 lncRNA upstream 141195 22652502 ~ 22653575 (-) True G72605
TU107432 lncRNA upstream 147010 22658317 ~ 22658828 (-) True G72603
TU107440 lncRNA upstream 155590 22666897 ~ 22667111 (-) True G72608
XM_043249520.1 mRNA downstream 60743 22341408 ~ 22398653 (-) True LOC122352034
XM_043248644.1 mRNA downstream 230897 22225558 ~ 22228499 (-) True neurod1
XM_043248643.1 mRNA downstream 235730 22171463 ~ 22223666 (-) True cerkl
XM_043249016.1 mRNA downstream 551683 21897185 ~ 21907713 (-) True LOC122351744
XM_043248710.1 mRNA downstream 563349 21744043 ~ 21896047 (-) True LOC122351560
XM_043249423.1 mRNA upstream 26668 22537975 ~ 22541710 (-) True dusp19a
XM_043249029.1 mRNA upstream 86521 22597828 ~ 22610069 (-) True dnajc10
XM_043249030.1 mRNA upstream 100051 22611358 ~ 22615781 (-) True LOC122351760
XM_043249032.1 mRNA upstream 105557 22616864 ~ 22620788 (-) False LOC122351761
XM_043249031.1 mRNA upstream 105557 22616864 ~ 22620788 (-) True LOC122351761
TU107316 other downstream 152383 22299172 ~ 22307013 (-) False LOC122351746
XR_006251764.1 other downstream 235729 22171463 ~ 22223667 (-) False cerkl
TU107092 other downstream 732576 21709288 ~ 21726820 (-) True G72363
TU106614 other downstream 1955506 20489164 ~ 20503890 (-) False G71938
TU106615 other downstream 1955506 20489164 ~ 20503890 (-) True G71938
TU107929 other upstream 1418900 23930207 ~ 23931329 (-) True G72930
TU107931 other upstream 1444912 23956219 ~ 23960325 (-) False grb14
TU108001 other upstream 1709215 24220522 ~ 24280708 (-) False G72978
TU108002 other upstream 1719928 24231235 ~ 24280708 (-) False G72978
TU108000 other upstream 1760148 24271455 ~ 24280708 (-) True G72978

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU677330 True 4135 lncRNA 0.41 3 NC_048571.1 28273202 ~ 28290556 (-)