RNA id: XM_043249018.1


Basic Information

Item Value
RNA id XM_043249018.1
length 2116
RNA type mRNA
GC content 0.54
exon number 18
gene id LOC122351746
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 22297007 ~ 22511307 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AATACTGAGAACAACAGGcgtTCCCTCAGTGCGTAGCGGAGAGACAGGTCTGCGCGCTGACACTCACTCCAGCGGGCTGATGCGCTCTGGAGCTGCGAGCAGGACCCTCTGGGAGACGTTTGTCGCTCAAACTGCCGGAGATGCTTTGAAGACCCGGATCTCTGTGCTACACGTGTTGAATCGCATACCTGCGTATCCCTCTGCATCTTAGATCACTCCAAACACTCGCGCGTTCGTGCACACCATGGATGCTCTGGCCAACGACACGGACGGGCTGGAGAACTCCTTGAAGTACTCCAAGTGCGACCAGACGGAGAAGATGTGGATTAGGCTGAAAGGAATGCAGAAGTACAAAAGCACATCTCAAAGATTGAGATGTCTGGTGAAGCAGCTGGATAAGGGGGAGGTGAACGTCGTAGATCTGAGGAAAAACATCGAATATGCCGCGTCGGTTCTGGAAGCAGTGTACATTGACGAAACTAGGCGGCTTCTGGACACAGAGGATGAGCTCAGTGATATCCAGGCAGACTCTGTGCCCATGGAGGTGCGAGATTGGCTGGCCTCCACCTTCACCAGGAAGATGGGAGTGGTGCGCAGACGGCCGGAAGAAAAGCCCCGGTTCCGCAGCATCGTTCACGCCGTTCAGGCTGGGATCTTTGTTGAACGaatGTACAGAAGAACATCCAACATGGCAGGGTTGACCTATCCACCATCTGTGATTACTGCTCTAAAGGATGTTGATAAATGGTCATTTGACGTCTTCACGCTTCAAGAGGCGAGTAGTGAACACGCTCTGAAGTTCCTGGTGTATGAACTTCTCACCAGATATGACCTGATCAGCCGCTTCAGGATACCAGTGTCCTCCTTGGTGTCATTTGTGGAAGCTCTGGAAATCGGCTACAGCAAGCACAGAAACCCTTATCACAATCTGATCCACGCTGCCGATGTCACGCAGACAGCACACTATCTGATGCTACACACTGGCATTATGCACTGGCTCACTGAACTGGAAATATTGGCCATGGTGTTTGCCGCTGCTATCCACGACTTTGAACACACTGGAACCACCAATAACTTCCACATCCAGACCAGATCGGAAGTAGCCATCCTCTACAACGATCGCTCGGTTCTGGAAAACCACCACGTGAGCGCAGCCTACAGACTCATGCAGGAAGATGAGATGAACATCCTGGTCAACCTCTCCAAGGATGACTGGAGAGAGCTGCGTACGCTGGTGATCGAGATGGTCATGAGCACAGATATGTCCTGCCATTTCCAGCAGATCAAGACGATGAGGAACACTCTGCAGCAGCCCGAGGGAATAGACAAGGCTAAAGCGCTGTCCCTGATGCTGCACGCGGCTGATATCAGCCATCCCGCTAAGGGCTGGAAACTGCACTACCGCTGGACACAAGCGCTCATGGAGGAGTTCTTCAGACAGGGTGACAAGGAGGCAGAACTAGGGCTGCCATTCTCTCCACTGTGTGACCGGAAAGCTACCATGATTGCCCAGTCTCAGATAGGGTTCATCGATTTCATCGTGGAGCCGTTCTCTGTTCTGGTGGACCACGACAGAGAGATCATTAGTCCTCTCATAGAGGAAGCTGTCAAATCTGGGGGTGTGCGCAGGTCAAGTTTGACAGGTCGGGGCTCGGCTGCAGTGGTGGAGTCAGTGCAGAGACACAGCGGTCGGGGTTCGAATGACGAGCAGGGGGGCACTACAGATTACTCACTGTGCGGCATCGACCTAAAACGAGTCCGACACCTGCTCTCTGAGATCATCCAGAACAACAAGGAGCGCTGGAAAGAGCTGTCTGTGCAAGAGTTGGCCAACAAACAACACGAGAGAATGTCAGACCTGGAAGAGGAGCCCATGAGGAACACACAAGTCACACTGTCCACGCAGCAGTCCAGCCAGAGGAGTCACGACTCAGAGTCCATCCTGAGCAGACTCAACAATACGGACTCCACTCACTCTTCCCAGGACTCTCTGGACCAGAGCTCCCAGTCCCCGACGGAGGGGCCCGGCGACGGCTCCCCAGAGGAGCACAGCTCAGAAACTCTGCCTTGGAATGGCAAAAAGCGCCCTACGTCACACAGGCGCAGCCAAGCCTGA

Function

GO: NA

KEGG:

id description
K13755 PDE1; calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107317 lncRNA downstream 898 22297007 ~ 22445495 (-) False LOC122351746
TU107333 lncRNA downstream 898 22297050 ~ 22445495 (-) False LOC122351746
TU107340 lncRNA downstream 135915 22307182 ~ 22310478 (-) True G72537
TU107272 lncRNA downstream 151325 22286774 ~ 22295068 (-) True G72502
TU107268 lncRNA downstream 322985 22123190 ~ 22123408 (-) True G72500
TU107400 lncRNA upstream 69279 22579803 ~ 22580772 (-) True G72583
XR_006251847.1 lncRNA upstream 75220 22585744 ~ 22588251 (-) True LOC122352087
TU107436 lncRNA upstream 141978 22652502 ~ 22653575 (-) True G72605
TU107432 lncRNA upstream 147793 22658317 ~ 22658828 (-) True G72603
TU107440 lncRNA upstream 156373 22666897 ~ 22667111 (-) True G72608
XM_043249520.1 mRNA downstream 47740 22341408 ~ 22398653 (-) True LOC122352034
XM_043248644.1 mRNA downstream 217894 22225558 ~ 22228499 (-) True neurod1
XM_043248643.1 mRNA downstream 222727 22171463 ~ 22223666 (-) True cerkl
XM_043249016.1 mRNA downstream 538680 21897185 ~ 21907713 (-) True LOC122351744
XM_043248710.1 mRNA downstream 550346 21744043 ~ 21896047 (-) True LOC122351560
XM_043249423.1 mRNA upstream 27451 22537975 ~ 22541710 (-) True dusp19a
XM_043249029.1 mRNA upstream 87304 22597828 ~ 22610069 (-) True dnajc10
XM_043249030.1 mRNA upstream 100834 22611358 ~ 22615781 (-) True LOC122351760
XM_043249032.1 mRNA upstream 106340 22616864 ~ 22620788 (-) False LOC122351761
XM_043249031.1 mRNA upstream 106340 22616864 ~ 22620788 (-) True LOC122351761
TU107316 other downstream 139380 22299172 ~ 22307013 (-) False LOC122351746
XR_006251764.1 other downstream 222726 22171463 ~ 22223667 (-) False cerkl
TU107092 other downstream 719573 21709288 ~ 21726820 (-) True G72363
TU106614 other downstream 1942503 20489164 ~ 20503890 (-) False G71938
TU107929 other upstream 1419683 23930207 ~ 23931329 (-) True G72930
TU107931 other upstream 1445695 23956219 ~ 23960325 (-) False grb14
TU108001 other upstream 1709998 24220522 ~ 24280708 (-) False G72978
TU108002 other upstream 1720711 24231235 ~ 24280708 (-) False G72978
TU108000 other upstream 1760931 24271455 ~ 24280708 (-) True G72978

Expression Profile