RNA id: TU107338



Basic Information


Item Value
RNA id TU107338
length 640
lncRNA type read_through
GC content 0.36
exon number 2
gene id G72535
representative True

Chromosome Information


Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 22311078 ~ 22458758 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CACACTTTTTTCTTAGCCAAAGTTTTACCCAAAGCCGATGCTGTCTCCaaagcatgcatgtttttttccctgcaaCAGGAGATTTATATGTGATATACATCTGATACGAGTCATCTGACATTTTCCATCTGcgctctttctttgtttttcaccaTTGTGTCGGCTCTCATCACCTCTTACCCTTTTCTCCAGCACAGTGACGACAGACTGTAAACTCACACGCACGGAGCCTCATGATTACATTGTAAATGCAAGCAACACATGTGGCCTGTGTTTGGGTTTAGATGGTCATGTATGGAGTCCCTTCTCTTCGTATGATTACACATGGATATAACTCTCCTGGAAACGGCTCTTTTACACTTTGGCTGCCTGTGACATGCTCCATTAATCTGCTGTGGCTGGATTTAAGCCTGCAAGCCCATTCTGTGTCTCTAGTTGGGTTGAAAATCAGGAATGAGTtccattaaaaatcatttaaaaattatatggatgttgatatttttattttctatttttatttttatttatttaatttttatcatttctatttagtcttcatttatttttcattttttattttttgtgttattagaACTTtaccttaaactttttttatttacttttcAGTGCATCATTTTCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU107340 lncRNA downstream 600 22307182 ~ 22310478 (-) True G72537
TU107272 lncRNA downstream 16010 22286774 ~ 22295068 (-) True G72502
TU107268 lncRNA downstream 187670 22123190 ~ 22123408 (-) True G72500
TU107261 lncRNA downstream 210840 22100026 ~ 22100238 (-) True G72493
TU107239 lncRNA downstream 254243 22054014 ~ 22056835 (-) True G72472
TU107400 lncRNA upstream 121045 22579803 ~ 22580772 (-) True G72583
XR_006251847.1 lncRNA upstream 126986 22585744 ~ 22588251 (-) True LOC122352087
TU107436 lncRNA upstream 193744 22652502 ~ 22653575 (-) True G72605
TU107432 lncRNA upstream 199559 22658317 ~ 22658828 (-) True G72603
TU107440 lncRNA upstream 208139 22666897 ~ 22667111 (-) True G72608
XM_043248644.1 mRNA downstream 82579 22225558 ~ 22228499 (-) True neurod1
XM_043248643.1 mRNA downstream 87412 22171463 ~ 22223666 (-) True cerkl
XM_043249016.1 mRNA downstream 403365 21897185 ~ 21907713 (-) True LOC122351744
XM_043248710.1 mRNA downstream 415031 21744043 ~ 21896047 (-) True LOC122351560
XM_043249014.1 mRNA downstream 1140303 21168939 ~ 21170775 (-) True LOC122351741
XM_043249180.1 mRNA upstream 23468 22482226 ~ 22484709 (-) True LOC122351832
XM_043249423.1 mRNA upstream 79217 22537975 ~ 22541710 (-) True dusp19a
XM_043249029.1 mRNA upstream 139070 22597828 ~ 22610069 (-) True dnajc10
XM_043249030.1 mRNA upstream 152600 22611358 ~ 22615781 (-) True LOC122351760
XM_043249032.1 mRNA upstream 158106 22616864 ~ 22620788 (-) False LOC122351761
TU107316 other downstream 4065 22299172 ~ 22307013 (-) False LOC122351746
XR_006251764.1 other downstream 87411 22171463 ~ 22223667 (-) False cerkl
TU107092 other downstream 584258 21709288 ~ 21726820 (-) True G72363
TU106614 other downstream 1807188 20489164 ~ 20503890 (-) False G71938
TU107329 other upstream 638 22459396 ~ 22511307 (-) False LOC122351746
TU107929 other upstream 1471449 23930207 ~ 23931329 (-) True G72930
TU107931 other upstream 1497461 23956219 ~ 23960325 (-) False grb14
TU108001 other upstream 1761764 24220522 ~ 24280708 (-) False G72978
TU108002 other upstream 1772477 24231235 ~ 24280708 (-) False G72978

Expression Profile