RNA id: TU107687


Basic Information

Item Value
RNA id TU107687
length 569
lncRNA type inter_gene
GC content 0.46
exon number 4
gene id G72803
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 23256078 ~ 23277786 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAAAGACAAGAGAGGGCCTCCGGAGAGCTCCACTGCCTTGCAGGATCCTACTCCGTCCTAGCTTTTATTAGTCTTGGAACGGACGACCTGTTGCATATTCTGAAGGGTGCTTTTAACCTCCCGCCCGTGAGGTCATGATCGGTCTCCAGAGCGACTTCTTTTGGAAGAAAGGATCAGATCAATTAACCACAGGCGGATGATCTGCCgTGTTTGGActccattctgacggcacccattcactgcagaagaccCATTGGTGAACGACTAAATCTCTCTCAAAACCCGatgtgatgaagaaacaaactagaTTCTAGATTTTTGATGGCCTGatgCAGCGGTCGCAATGGAACAGAGTTTTGCGGTTCTTCAAATTTTCTCCTTTCTTGTTTACTGGAGCAAAAACATTCTATGGATTTCAGAGCGACATTgCACACTTCTGCTTCTGACATCAGTCTAGACATCGGGACCTGTGGAAAACACGacacattatacatttaatgcGCTGTTTAGAACGCATCAGATGTATTTTACATGACTACTGGAGCAAAGTGCATCTGTTGTGTGAAAGG

Function

GO:

id name namespace
GO:0042440 pigment metabolic process biological_process
GO:0051186 obsolete cofactor metabolic process biological_process
GO:0042168 heme metabolic process biological_process
GO:0046148 pigment biosynthetic process biological_process
GO:0033013 tetrapyrrole metabolic process biological_process
GO:0033014 tetrapyrrole biosynthetic process biological_process
GO:0006778 porphyrin-containing compound metabolic process biological_process
GO:0006779 porphyrin-containing compound biosynthetic process biological_process
GO:0006783 heme biosynthetic process biological_process
GO:0005215 transporter activity molecular_function
GO:0004418 hydroxymethylbilane synthase activity molecular_function

KEGG:

id description
ko00860 Porphyrin and chlorophyll metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107677 lncRNA downstream 252338 23003397 ~ 23003740 (-) True G72795
TU107661 lncRNA downstream 314062 22941815 ~ 22942016 (-) True G72780
TU107487 lncRNA downstream 364459 22828098 ~ 22891619 (-) True G72646
TU107450 lncRNA downstream 555059 22700729 ~ 22701019 (-) True G72615
TU107440 lncRNA downstream 588967 22666897 ~ 22667111 (-) True G72608
TU107712 lncRNA upstream 30701 23308487 ~ 23350822 (-) False LOC122352044
TU107711 lncRNA upstream 42700 23320486 ~ 23350822 (-) False LOC122352044
XR_006251832.1 lncRNA upstream 53495 23331281 ~ 23350941 (-) True LOC122352044
TU107710 lncRNA upstream 53503 23331289 ~ 23350822 (-) False LOC122352044
TU107714 lncRNA upstream 60908 23338694 ~ 23344034 (-) True G72816
XM_043249636.1 mRNA downstream 11831 23005838 ~ 23244247 (-) True hdac4
XM_043249637.1 mRNA downstream 144278 23005838 ~ 23111800 (-) False hdac4
XM_043249638.1 mRNA downstream 144479 23005838 ~ 23111599 (-) False hdac4
XM_043248246.1 mRNA downstream 349766 22902448 ~ 22906312 (-) True agr1
XM_043249090.1 mRNA downstream 610331 22636895 ~ 22645747 (-) True itgb2
XM_043249532.1 mRNA upstream 3728 23281514 ~ 23290139 (-) True LOC122352042
XM_043249020.1 mRNA upstream 112906 23390692 ~ 23410990 (-) True LOC122351748
XM_043249534.1 mRNA upstream 141476 23419262 ~ 23426434 (-) True gjc4b
XM_043249535.1 mRNA upstream 141476 23419262 ~ 23426000 (-) False gjc4b
XM_043249556.1 mRNA upstream 286593 23564379 ~ 23649560 (-) True LOC122352061
TU107329 other downstream 744771 22459396 ~ 22511307 (-) False LOC122351746
TU107316 other downstream 949065 22299172 ~ 22307013 (-) False LOC122351746
XR_006251764.1 other downstream 1032411 22171463 ~ 22223667 (-) False cerkl
TU107092 other downstream 1529258 21709288 ~ 21726820 (-) True G72363
TU106615 other downstream 2752188 20489164 ~ 20503890 (-) True G71938
TU107929 other upstream 652421 23930207 ~ 23931329 (-) True G72930
TU107931 other upstream 678433 23956219 ~ 23960325 (-) False grb14
TU108001 other upstream 942736 24220522 ~ 24280708 (-) False G72978
TU108002 other upstream 953449 24231235 ~ 24280708 (-) False G72978
TU108000 other upstream 993669 24271455 ~ 24280708 (-) True G72978

Expression Profile