RNA id: TU107714


Basic Information

Item Value
RNA id TU107714
length 525
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G72816
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 23338694 ~ 23344034 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gaaggatcaactcaaagcgaaataaaacacaagacaagttcttatggattttaaggcttgcaaagattgcgctgtcgattgcaagcgggagagaagcaggtttctccttaacctcccttttgcctccagacggatcacagtccgcctgaggccgggggccgggcaggcccccgccttctgcctccttccctgctttgcctcctcctgctttgcctcctccgacgctcagatcgcaagtcactttatttatagaggaaaggacaagatacagtaaatgaaaacaattggccacatttcttgtgcgtcagaatcttcactccttcagattcttccggtggccctatcagtattctacggaggccatgttatgaccaagaatcaaactgaaactaaaaggccacaggtgcataactgtcaacatttaactccaacattccgttctcatcaggctgacaaagcctggcacccgatggaagctgtaactgaaggatcaaagttgcaaaatgtcaatacataaccctaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107687 lncRNA downstream 60908 23256078 ~ 23277786 (-) True G72803
TU107694 lncRNA downstream 67175 23271094 ~ 23271519 (-) True G72809
TU107693 lncRNA downstream 69930 23268321 ~ 23268764 (-) True G72808
TU107677 lncRNA downstream 334954 23003397 ~ 23003740 (-) True G72795
TU107661 lncRNA downstream 396678 22941815 ~ 22942016 (-) True G72780
XR_006251833.1 lncRNA upstream 16978 23361012 ~ 23380056 (-) False LOC122352045
XR_006251834.1 lncRNA upstream 16978 23361012 ~ 23377877 (-) False LOC122352045
XR_006251835.1 lncRNA upstream 16978 23361012 ~ 23365250 (-) True LOC122352045
XR_006251836.1 lncRNA upstream 36124 23380158 ~ 23387077 (-) True LOC122352046
TU107858 lncRNA upstream 90142 23434176 ~ 23434476 (-) True G72881
XM_043249532.1 mRNA downstream 48555 23281514 ~ 23290139 (-) True LOC122352042
XM_043249636.1 mRNA downstream 94447 23005838 ~ 23244247 (-) True hdac4
XM_043249637.1 mRNA downstream 226894 23005838 ~ 23111800 (-) False hdac4
XM_043249638.1 mRNA downstream 227095 23005838 ~ 23111599 (-) False hdac4
XM_043248246.1 mRNA downstream 432382 22902448 ~ 22906312 (-) True agr1
XM_043249020.1 mRNA upstream 46658 23390692 ~ 23410990 (-) True LOC122351748
XM_043249534.1 mRNA upstream 75228 23419262 ~ 23426434 (-) True gjc4b
XM_043249535.1 mRNA upstream 75228 23419262 ~ 23426000 (-) False gjc4b
XM_043249556.1 mRNA upstream 220345 23564379 ~ 23649560 (-) True LOC122352061
XM_043249021.1 mRNA upstream 372075 23716109 ~ 23717055 (-) True LOC122351749
TU107329 other downstream 827387 22459396 ~ 22511307 (-) False LOC122351746
TU107316 other downstream 1031681 22299172 ~ 22307013 (-) False LOC122351746
XR_006251764.1 other downstream 1115027 22171463 ~ 22223667 (-) False cerkl
TU107092 other downstream 1611874 21709288 ~ 21726820 (-) True G72363
TU106615 other downstream 2834804 20489164 ~ 20503890 (-) True G71938
TU107929 other upstream 586173 23930207 ~ 23931329 (-) True G72930
TU107931 other upstream 612185 23956219 ~ 23960325 (-) False grb14
TU108001 other upstream 876488 24220522 ~ 24280708 (-) False G72978
TU108002 other upstream 887201 24231235 ~ 24280708 (-) False G72978
TU108000 other upstream 927421 24271455 ~ 24280708 (-) True G72978

Expression Profile