RNA id: TU107919


Basic Information

Item Value
RNA id TU107919
length 1682
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G72927
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 23912173 ~ 23913886 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCGCCCCATCTAACCAATTGGAGTGCAAGTATGAAAGGCACAAAATGTCTAACAAtcgttaaattaaaaacaaggcCCCTTTTTGGCACATATTACTGATCTTCAATCAGCATCATATGTTTTGAAATTcaagtgtgtttttacagtAGATAATTGCTGTTGCTTCCAAGTAGCTACTCAAGATCTGGCCATCCCTGTTTCCTGGCAGCTGACAGACCTCTGTTCTCGTTCTGCTTTTCTACCATGTGGTAGAATGCAggtggtgtatgtgtgtgtttgtagagtGGGgatcagcatttactaatgatGTGCTGACAGAGGGCTAGATTAGGACACAGGGCTGACATTGACATATGTGATATAAAGTGGGTTAAGTgcctataaataaacacaggtTTGCACTGCAGTGCCAGTGGGCTGTGCCTCACCTTGCTTCACTCTCATCTGTGGTGGGATGTGTGCAAGGGTGATTTTGTCCAGTGCAACGCTTGAATGGGGTTAGCTGAAGAGTCCTCTGGAGGAATGCAAAGTGGTGCGTGGGTTTAGTGAGTTGTTTAACCAATTTTTGTACCATTTTTAAGGGAAAacatgtgttttattcattgaaAAGCCCAAtgcaacagcattttttttttaaataataaataaaaagtgacgTTTGCACTGGGTTTAAATAGGCTCAGCTGGTCATAAAGATTCaaaagaaaattacaaacaataaaGTAACATACATTGAGAttcaaaatctattttaaacctaaaaataaaaaaaggattgtaaacatttttatataggaAAAAATTAGCAGATTTTGTAAAGTGTAGGTCATTAAGtagtaaatacacacacacacacacacacacacacacacatatatatatatatatatatatatatatattatatatttatacaatttcaagatttaaagaaataaattactgacccacaaaaaatgctaaatagaaGCATTCtttagtgtaaataaatgtgaccaGTGAGAAGTCATGGGTTAACTTGCTCAGTAAGCAGGTGTGATCTATAATGCCCtgttcacacagacacatatcGGGTTTTATCGCTGAAGGCCCCCGGATCAATGCACTTTTGGATTGTACTGGGCGTTCCTACAACTCTATGTTCTGACGTCATTGGTGGCCTGTGTGAATGAGCATATGAAAATCTGATCACAAAAGGGACAAGAATTCAGCTGCTTTTCCtaaatttcaacattaaaattCACATTCCTGTATTTTCAGTGTAGCCTTTTGGATGCCACTGTATGTGACCTTATTGTCATTGTGCGAAAATTGGCAGTTGAACGACGATCAAGGGCTGCTAGAGCGACAGCTGTAACATCCCTTGATTTAGTTATACTTTAATTCACTACCCATATCTCTACCCCTTATTATCTCTTccccatctgtctctctcttccccgttcctctctttctctgtgagCGTTGAATTGAACAGCTCAATCCAGAAATAGAAGTCGATTAAGCTTTAACATTGATCCTAACGTGTTAGACAGCGTTCAGCCCAGCATTCGCTTTTGTAGCTTAGCCTTTGATATATTAGCACATTAATCTTCAGTATCTTTCACAGTATTACCACATCTCGCTCGCCCTTAGTAgtagcttttatatatttactttatctAGTTAGCGTTGTGCTAAC

Function

GO:

id name namespace
GO:0030162 regulation of proteolysis biological_process
GO:0051246 regulation of protein metabolic process biological_process
GO:0005520 insulin-like growth factor binding molecular_function
GO:0019838 growth factor binding molecular_function
GO:0031995 insulin-like growth factor II binding molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107908 lncRNA downstream 137 23911453 ~ 23912036 (-) True G72923
TU107903 lncRNA downstream 278096 23558753 ~ 23634077 (-) True G72918
TU107885 lncRNA downstream 311281 23598987 ~ 23600892 (-) True G72904
TU107891 lncRNA downstream 372070 23537504 ~ 23540103 (-) True G72909
TU107866 lncRNA downstream 439445 23472413 ~ 23472728 (-) True G72889
TU107925 lncRNA upstream 12337 23926223 ~ 23981238 (-) False G72929
TU107928 lncRNA upstream 12337 23926223 ~ 23981238 (-) True G72929
TU108005 lncRNA upstream 339476 24253362 ~ 24285690 (-) True G72980
TU108009 lncRNA upstream 368105 24281991 ~ 24284165 (-) True G72984
TU108125 lncRNA upstream 599208 24513094 ~ 24521308 (-) True G73077
XM_043249021.1 mRNA downstream 195118 23716109 ~ 23717055 (-) True LOC122351749
XM_043249556.1 mRNA downstream 262613 23564379 ~ 23649560 (-) True LOC122352061
XM_043249534.1 mRNA downstream 485739 23419262 ~ 23426434 (-) True gjc4b
XM_043249535.1 mRNA downstream 486173 23419262 ~ 23426000 (-) False gjc4b
XM_043249020.1 mRNA downstream 501183 23390692 ~ 23410990 (-) True LOC122351748
XM_043249022.1 mRNA upstream 795 23914681 ~ 23918652 (-) True LOC122351750
XM_043248342.1 mRNA upstream 30099 23943985 ~ 23960093 (-) True grb14
XM_043248989.1 mRNA upstream 68084 23981970 ~ 24029114 (-) False cobll1b
XM_043248987.1 mRNA upstream 68085 23981971 ~ 24029114 (-) True cobll1b
XM_043248988.1 mRNA upstream 68086 23981972 ~ 24029114 (-) False cobll1b
TU107329 other downstream 1400866 22459396 ~ 22511307 (-) False LOC122351746
TU107316 other downstream 1605160 22299172 ~ 22307013 (-) False LOC122351746
XR_006251764.1 other downstream 1688506 22171463 ~ 22223667 (-) False cerkl
TU107092 other downstream 2185353 21709288 ~ 21726820 (-) True G72363
TU106615 other downstream 3408283 20489164 ~ 20503890 (-) True G71938
TU107929 other upstream 16321 23930207 ~ 23931329 (-) True G72930
TU107931 other upstream 42333 23956219 ~ 23960325 (-) False grb14
TU108001 other upstream 306636 24220522 ~ 24280708 (-) False G72978
TU108002 other upstream 317349 24231235 ~ 24280708 (-) False G72978
TU108000 other upstream 357569 24271455 ~ 24280708 (-) True G72978

Expression Profile