RNA id: TU108125


Basic Information

Item Value
RNA id TU108125
length 2384
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G73077
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 24513094 ~ 24521308 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGtcgtgtttatttaaaatacatggcAACATAATTCATTAGTACCGCTGATAATCAGTTTTCCAGCAAAGGCAGAAAATACAGtcgtcttttttttcttttctttttttaatcttcgcCTTTTGACATCAAATGTAAACCACATAACACAGCAACCTGTCTGCAGTGCAAATAAGACGACGGCTAATTAGCTGTAGCGCTTCTCCAGCTCGAAacagacagcagcagcaacCTTCCCAACACCGAAAGAAACGGCATCAAAACACTcgaatcaaaagtaaaaaaaaaaaaaaaaaaaaagctcggCTGAATGATGATCAAATGCGTGAGGAAAACCGGAAGAATCTTTTATTCTGAACtcaaaaaagctaattaaaaaaaaacacaacataacaataacaaatgacCAGTGTTTGGTGCCACTTACTCATCAAAGTGCAAGTATGTTCATTCAAACAGTGATAGTTTGATATATTCCGTAATCTCATATGTACCTTTATTATGAAGTGCGGGCACAATAATAAAAGCGATCCTATTTTGAAATACGACTGTGATTCATTGAGAAATGATTATCAAATATAACCACTTGATGATAAATTTCACCGTTTATTTCAGGTGAAATCGCTTTGAAATACtttcctggaaaaaaaacaacactttctGTTAAAACACGTTCCTTAAAAGAAGCAGATTTTGTTTCAGCGCCGAAACGCCGACACAGGTACACTATCATTccgaagacttttattttgaaagaagtgaGTACTTTTATTCGGCAAGAACGCATTCGACTGCAGATTcgaaatatttctgtttcaaataaacgtGGTCTTAAAATCTTCCGTTCGACGAAGAGTCCCGAAAAGGCATCGCTAACgcgtttccacaaaaacatgaaCCGTTTTCGAcgctgataataagaaatgtttcttgagcagcgaatcagcgtattagaacgACGACTGCGGTAACGACGCTGAAAATccacaggaataaaatacatttttatatttaaccgAATAGACAAGTTATTTTTGATCGAATGAATGCAGCCTCGTTGACCAGAAGACACCTTTTCGTCTTTTGAATGATAGTGTGCTTGTGAAAATATGTTTGGAATGCCACCGATTTGTCACGAATGAATAAATTGACCGGCTGCCATTTTAAAACACCGTCACCCCATTTCCACGAAAACGATGCTGTTGCTCGTGTCGGAGCTGATGCTCGGCTGGAGAACGGGAGAAGCTCTCGGTTTAAGTCATGGAAGTGATTGTTACAGCATACCctttctgcaaaaaaataaaaattacagcgCATCGCTATGCTTAAATGTGGTGTCGGAAGTTGCCATGcagtcacaaaaataaaaccagcgTGCTCACAAGATAAGAGTCGTCCGGTTTTGTCTGGGATAATCAAAAGTAGATGTTTGGATGTGATTTAAGCAGATTTAAGGCCACGAGCATTACATGCAAACGCGAATGCAGATCAGATCAGTGTTTTTACCTCCGTTCTGAACAGTTCCTACGACTGTTGTGAAATGCCTTTAATTTCTTGGTCATACAAACGTTACCAGTCCGTTTTGTAACGTTGCAAACATTGTGGGAAGATTACAGATCTGAACATCCAAATACGAATATTGAATAATCGGTATTtcaggggagaaaaaaaaatcacgcaTAGTATATCATCATGCTATTTTTGCTAATATTATTAAGGATCAAACAGCAAACACTGTATTACGGTTACTGGAAGAACGTTTCATCATAACGTTTGACTGAAGTTATGAGAAGTTACTGCTATCTGTACTAGTACTGTAAACTGTCAGTAGCTAACTAGTTTAAAAGGTTCAACTAACTTACAAgagtctgtaaaaaaaaaaatgcatttttttttgtaatgcgcAAAATCAAGTATTTAACTTTCAGGTAACACTACACATACATtcacattagttaatgtattatttaacgtgaatgaacaatgaacactacatttattatactctttattaatgtttgttaatgttaagttataaaaaatacagtcgTTCATTGTTAGTTCGTCGTAGTTCACGGTGTATTGTCGACAAATACAACTTGtggtttttaataatgcattggtaaatgctgaaattaacaatTAAGATTAATAGTTGCATTTCTCATTATTAGTTCACGTCAACTAACGAAGCTTGTTGCAAAGCGTTAACGGCGTTCACGTACAGTACTTGCATAAGGTTATATTTGGATAGACCTTTGTGGATGcttgtgtaattattttgtaaagtaACATTCCCATAATGTTTAAAAcgtattaaatgaaatgttctgGTAACATTTGCaaaacgaagaaaaaaaaaaatatatatatatatatatataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108005 lncRNA downstream 227404 24253362 ~ 24285690 (-) True G72980
TU108009 lncRNA downstream 228929 24281991 ~ 24284165 (-) True G72984
TU107925 lncRNA downstream 531856 23926223 ~ 23981238 (-) False G72929
TU107928 lncRNA downstream 531856 23926223 ~ 23981238 (-) True G72929
TU107919 lncRNA downstream 599208 23912173 ~ 23913886 (-) True G72927
TU108133 lncRNA upstream 43573 24564881 ~ 24571112 (-) True G73084
TU108266 lncRNA upstream 218018 24739326 ~ 24745938 (-) True G73160
TU108285 lncRNA upstream 254852 24776160 ~ 24778655 (-) True G73175
TU108295 lncRNA upstream 279730 24801038 ~ 24801377 (-) True G73179
XR_006251791.1 lncRNA upstream 291008 24812316 ~ 24820878 (-) True LOC122351686
XM_043249564.1 mRNA downstream 31007 24425526 ~ 24482087 (-) True stk39
XM_043249607.1 mRNA downstream 319292 24142666 ~ 24193802 (-) True csrnp3
XM_043248992.1 mRNA downstream 474964 24029509 ~ 24038130 (-) True slc38a11
XM_043248988.1 mRNA downstream 483980 23981972 ~ 24029114 (-) False cobll1b
XM_043248138.1 mRNA upstream 8364 24529672 ~ 24533048 (-) True spc25
XM_043248139.1 mRNA upstream 8364 24529672 ~ 24532778 (-) False spc25
XM_043249351.1 mRNA upstream 12569 24533877 ~ 24558743 (-) False abcb11a
XM_043249350.1 mRNA upstream 12569 24533877 ~ 24558743 (-) True abcb11a
XM_043249352.1 mRNA upstream 12569 24533877 ~ 24558741 (-) False abcb11a
TU108001 other downstream 232386 24220522 ~ 24280708 (-) False G72978
TU108002 other downstream 232386 24231235 ~ 24280708 (-) False G72978
TU108000 other downstream 232386 24271455 ~ 24280708 (-) True G72978
TU107931 other downstream 552769 23956219 ~ 23960325 (-) False grb14
TU107929 other downstream 581765 23930207 ~ 23931329 (-) True G72930
TU108324 other upstream 506277 25027585 ~ 25030965 (-) True G73201
TU108463 other upstream 827470 25348778 ~ 25349640 (-) True G73301
TU108462 other upstream 935106 25456414 ~ 25458742 (-) True G73300
TU108524 other upstream 1269209 25790517 ~ 25793056 (-) True G73347
TU108525 other upstream 1272775 25794083 ~ 25832356 (-) False LOC122351758

Expression Profile