RNA id: TU108133


Basic Information

Item Value
RNA id TU108133
length 3230
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id G73084
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 24564881 ~ 24571112 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGGGCCACCAAAGGGCACTTTAATTATGGacagtaatatataaaatgtatttttatttgattgcattAATGCACGCCTTTGCATAACACTTGAATGAGATCCAATACGCTCTCTCCTAATTTTGAGGAGCTGATTACACAATAGCGTCTGTTTCACACCATATACAGTGTgtcattatttcacaaaatatatagCATTTTATCTTTTCAGAAGTCTTGTATTCTCCCGCTAATCGGCACGAGACTTGCCGCGAAGACATCAGACATCATTTTGACGTGATCCAGATTTTCCCTTTTTCTGCCACTCTGCAGATCGCAAGTTAAACGATACAAAGCGCTCTACATTTTTCTGCTGCACGTGATGAACGTTCATGCCGGTTTTTTAACTCGGCATCATCATAaatctaatattattattatttttttttttgcacatcgGCTGGACTGAGCTGCAGGGTTATTTTTAGTGATGTTCAGCTCTTCTTCACGGAAGGCATTATAACGCTGGTGAAGAGGTCTGCTATGCGTGTCGGCAGGTACGAGAGCGGGATCCAGAGGAGCTTGGCGTCCCAGCCGGCGCTGTAGCGCGTTCGGGGATGCCGCGCTGAAAGAGCGTGCTGCATGCACGAGGTCACTTTATTAAGATCGCCGCTGGCCAGAATCTTCATGGAGAACTCCTGCAGCTTTATATCTGGAAGAAAAGATTGAGAGAAGTGCAGACATGTCAGTACGACGTAACGGCGTCGTCGCACGAGGCTCTGAATACAAGGCTAATATAAACGATaatggactattttaaccaACGTTTGTCTCTGTGATGTATTTTTAGAGCATTGTGGTATCGACTGTTGTACTAGGAGTGTTTTCAAACATGTTTCACTGGATGAGCACGTTTTacgtgaactattccttttaaatgcatcatgATAGAAATCTAAAACAGTGTTGTGTTGCATGAAATCTGCGCTCATAGGACACCAGAAGCACTCACAGTCCTGCAGGTATGAGTCTCCGTAGGCTCTCCTGACCTCTGCTGGCAGGCTGTTCCATCGTTTCTTCAGATCATCTTCAATGAGGCCTAGATCTGTCACTTGTGTCTTGAAGAAGCCTGGTTCAATGATACTTACTTTTACTCCAAAGTGCCTCATATCTCCTCAAGCTATCAGAGAAGGCCTCCACACCATATTTAGCGAGACAATATCCTCCCCCGATGAGCGAGACTCTTCCCAGGATACTGGCCACGTTCACCACCCGACCACGAGCCTTCTTCAGCAGAGGAAGAAACTTCAGAGTCACCCCAATGAGGCCGATGAGGTTAACATCCAGGACCTTCTTAAAGTCGTCCGGCTGCATCCATTCCATGGGGCCGATGGGGACCGAGATGCCGGCGTTGTTCACCAAACCCCACAGACCTGACAGGAAAACATAAGAAATCCAGCGTGCATGCACATCACGCAATGAAAAGAACGGTTCCCCCACTCTCAGGCCTTTCAAGACGTAGATGGgtctgtttcttcatcaggaCGGATTTGGAAAagttgcatcacttgctcaccaatgtaGCTcactctgtagtgaatgggtgccgtcggaatccaaacagctgataaaaccgtcacagtaatccacaccacttgagtccatcaattaatgtctcgCGATATGAAAAACGGCATGTTCGTAGgaaacaaatctatcattaagacaataatattgcataatattGCATTCTTCAGTTAAAAAGTTGTTTCGACTGAGATACATTAGGAGATAAATATGGACAGATCAAGCCATGTTTAGAAACAAAAACGGTACTAAAATAGTTAACAAATGTTGATAGATTTTGGTGTGAGAtgagaacaaaaaaatggaCCTCTTTATTGGATAAGGTCTTATTATGGATTATGCACTTGTCGAAATCAAcgatttaaagttaaaatgcctcaaaggattgttttttttttacaagcatgcagctttttacttcacaatatagtaaaaaaaaattcatgtgaATTATTCTGGTGTTTTTTcggctgtttagactctcattctgacggcacccatccactgcagaggAACCACTGGTGAAAATCTGTtctgacgaagaaacaaactcatctacatttagGATGTCCTGAGGGTTAACTGGAGAGCAAGTAACGTAATGCTAAACGTTTGCATAGTTTGTTCATAAAGCATTGAAAACGTCGTCTTTGCGGATggtcattattttttcaattcagttatgaaaaaggtagatttttttattcGTATCGGAAAAGTACTGCTAGTTGGTCAAACTAGTTCTTAAGACAAACGGTCTTAACATGGTGACCAAGTTTATGCAACTAGCCcccatgaagaaaaaaaaaaaagtctaaaaacacTAAAAGGTGATTAAACTGTCAGCCAAGATTAATTTTCGGCAGCGCTATCACTttaaggtcaaaggtcactgaGGTGAGCAAACACGTCAAGTGCAATACAAGGAAAGCAAGtcgttttataataaatgttgcGGCTTTGGTATGAGAATGGCATTCGCCTGAAGATGCTCCTCCAGGTCAACTAAAAGCGCTTGTCCGAGGTTTTTGCAGATTTATGAGTTTGTCCGAGAGCCGCGCGGTCGTCAAAGCGCCCGTATCTCGGCTTTATCTCTCGCTGTGCTCGACTCTCCCCGGCACCCTATCTGACCCGTCCGTCTCACCTCTCTCCCCGGTCTCGCTGCGCACGCGCTCCAGCGCGCTCTCCACGCTCGCGCTGTCGGTAACATTGAGCAGAAGCGTCTTGAGCCTGGGGGAGGCCGCCGCGCGCAGCCTGGAGGCGCCAGGTTCCGTGAGGCACGCGGCGATCACGTGAAAGCCCCGCCGGTCGAGCTGGCGCGCCGCGAGCGCTCCGAAGCCGCTGTCGCAGCCCGTCACCAGAACGCGCTTCGTGGACGCCGCCGATCCGACGGGAGTCACGGAAGAACCAGACCGCGGCGGCGAGCGCCAGAACGGCCAggaaacagcagcagaagaagagCGCCTGAGAAGGGAGACACTGGCCTTTAAAGGACGAAAGCATCCGAGACGAAGCTTGGCATGTAGGAGAGAGGCAGCCAGAAGAACTTGGCGTCCCAGCCTGGGGAGTATCTGGAGCGAGGATGGACCGCGGCCACCGCGTGCTCCATGCAGCTGACCACCTTCATCAGATCTGGGTCCAGTATCTTCTCAATCTTCTCCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108125 lncRNA downstream 43573 24513094 ~ 24521308 (-) True G73077
TU108005 lncRNA downstream 279191 24253362 ~ 24285690 (-) True G72980
TU108009 lncRNA downstream 280716 24281991 ~ 24284165 (-) True G72984
TU107925 lncRNA downstream 583643 23926223 ~ 23981238 (-) False G72929
TU107928 lncRNA downstream 583643 23926223 ~ 23981238 (-) True G72929
TU108266 lncRNA upstream 168214 24739326 ~ 24745938 (-) True G73160
TU108285 lncRNA upstream 205048 24776160 ~ 24778655 (-) True G73175
TU108295 lncRNA upstream 229926 24801038 ~ 24801377 (-) True G73179
XR_006251791.1 lncRNA upstream 241204 24812316 ~ 24820878 (-) True LOC122351686
TU108298 lncRNA upstream 241204 24812316 ~ 24821062 (-) False LOC122351686
XM_043249351.1 mRNA downstream 6138 24533877 ~ 24558743 (-) False abcb11a
XM_043249350.1 mRNA downstream 6138 24533877 ~ 24558743 (-) True abcb11a
XM_043249352.1 mRNA downstream 6140 24533877 ~ 24558741 (-) False abcb11a
XM_043248138.1 mRNA downstream 31833 24529672 ~ 24533048 (-) True spc25
XM_043248139.1 mRNA downstream 32103 24529672 ~ 24532778 (-) False spc25
XM_043248836.1 mRNA upstream 750 24571862 ~ 24667167 (-) True lrp2a
XM_043249293.1 mRNA upstream 146498 24717610 ~ 24727730 (-) True fastkd1
XM_043248298.1 mRNA upstream 157256 24728368 ~ 24733782 (-) True ccdc173
XM_043249729.1 mRNA upstream 183776 24754888 ~ 24758657 (-) True mettl5
XM_043248413.1 mRNA upstream 190429 24761541 ~ 24764855 (-) True cxcr2
TU108001 other downstream 284173 24220522 ~ 24280708 (-) False G72978
TU108002 other downstream 284173 24231235 ~ 24280708 (-) False G72978
TU108000 other downstream 284173 24271455 ~ 24280708 (-) True G72978
TU107931 other downstream 604556 23956219 ~ 23960325 (-) False grb14
TU107929 other downstream 633552 23930207 ~ 23931329 (-) True G72930
TU108324 other upstream 456473 25027585 ~ 25030965 (-) True G73201
TU108463 other upstream 777666 25348778 ~ 25349640 (-) True G73301
TU108462 other upstream 885302 25456414 ~ 25458742 (-) True G73300
TU108524 other upstream 1219405 25790517 ~ 25793056 (-) True G73347
TU108525 other upstream 1222971 25794083 ~ 25832356 (-) False LOC122351758

Expression Profile