RNA id: TU108463


Basic Information

Item Value
RNA id TU108463
length 863
RNA type TUCP
GC content 0.61
exon number 1
gene id G73301
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 25348778 ~ 25349640 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gggcggaaccagcgggctaacgggacggctgggcggaaccagcgggctaacgggacggctgggcggaaccagcgggctaacgggacggctgggcggaaccagcgggctaacgggacggctgggcggaaccagcgggcttactgggtagctgaacgggaacaggaactcaggatacaggggaggtgcccagtctaagtccaagtctacatcatccagctccctttgcagatccagcagccccaggtggatgatcagctcatcctcagccgatgtgcagtaggcggagctccactccgcgctctcatcgcagtcggctgtctccaccgcggggagctccgttgctggctcgcgcacctggtctgacgtatacggctcgggtcctgttacgctccacgactctgtcgctctctctggcgatgggtccgtggtcgcgcttgactccgcccccgtgtcagcggtgggctcaggctggggctcgaccttgcggtgaagggatgagttgggctctggatctggagtggggctggtgtcgttgtcctcaggcgcaaccatcatggttgatttgcaggacaccagcacccactcgacgtacgcggcgaggctctctcgaggaccgctcccggacagctgcgcttggctggaggtgttaagtccgcggaaatagagttcgagcagagagcagtccgggtagcgagagtcgttggccagttcgaggaatagttctgtatagtcctcgagagagcaatccccctgctccagcaggcggatgaggaagttcgggtctttaaactgggcaaacatggcaaaaaacaaaaaataaggggggaaaatacgccgctatttacttctttatatggtccgag

Function

GO:

id name namespace
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0046982 protein heterodimerization activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
ko05203 Viral carcinogenesis
ko05322 Systemic lupus erythematosus
ko05034 Alcoholism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251708.1 lncRNA downstream 253979 25092636 ~ 25094799 (-) True LOC122351187
TU108303 lncRNA downstream 508817 24839606 ~ 24839961 (-) True G73186
TU108298 lncRNA downstream 527716 24812316 ~ 24821062 (-) False LOC122351686
XR_006251791.1 lncRNA downstream 527900 24812316 ~ 24820878 (-) True LOC122351686
TU108295 lncRNA downstream 547401 24801038 ~ 24801377 (-) True G73179
TU108464 lncRNA upstream 1423 25351063 ~ 25389815 (-) True G73302
TU108467 lncRNA upstream 122626 25472266 ~ 25476172 (-) False G73305
TU108468 lncRNA upstream 122626 25472266 ~ 25476938 (-) True G73305
XR_006251714.1 lncRNA upstream 394381 25744021 ~ 25750389 (-) True LOC122351247
TU108533 lncRNA upstream 484677 25834317 ~ 25846796 (-) True G73350
XM_043248249.1 mRNA downstream 540997 24803623 ~ 24807781 (-) True gpbar1
XM_043249720.1 mRNA downstream 551724 24789506 ~ 24797054 (-) True zgc:92380
XM_043248763.1 mRNA downstream 562541 24784903 ~ 24786237 (-) True LOC122351587
XM_043248760.1 mRNA downstream 576519 24768285 ~ 24772259 (-) True LOC122351585
XM_043248413.1 mRNA downstream 583923 24761541 ~ 24764855 (-) True cxcr2
XM_043249181.1 mRNA upstream 110255 25459895 ~ 25462849 (-) True LOC122351834
XM_043249028.1 mRNA upstream 481338 25830978 ~ 25853303 (-) True LOC122351758
XM_043249521.1 mRNA upstream 513113 25862753 ~ 25919696 (-) True LOC122352035
XM_043249390.1 mRNA upstream 715572 26065212 ~ 26067013 (-) True gcgb
XM_043248248.1 mRNA upstream 718598 26068238 ~ 26080787 (-) True LOC122351282
TU108324 other downstream 317813 25027585 ~ 25030965 (-) True G73201
TU108001 other downstream 1068070 24220522 ~ 24280708 (-) False G72978
TU108002 other downstream 1068070 24231235 ~ 24280708 (-) False G72978
TU108000 other downstream 1068070 24271455 ~ 24280708 (-) True G72978
TU107931 other downstream 1388453 23956219 ~ 23960325 (-) False grb14
TU108462 other upstream 106774 25456414 ~ 25458742 (-) True G73300
TU108524 other upstream 440877 25790517 ~ 25793056 (-) True G73347
TU108525 other upstream 444443 25794083 ~ 25832356 (-) False LOC122351758
TU108526 other upstream 444443 25794083 ~ 25819211 (-) False LOC122351758
TU108498 other upstream 498177 25847817 ~ 25853294 (-) False LOC122351758

Expression Profile